JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCL15_chr17_35992582_36006553	0/0	g0085	1	1	0	0	0	0	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0086	1	1	0	0	0	0	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0087	1	0	0	1	0	0	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0088	1	0	0	1	0	0	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0089	1	1	0	0	0	0	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0090	1	1	0	0	0	0	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0091	1	1	0	0	0	0	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0092	1	1	0	0	0	0	CCL15	chr17	35992582	36006553
CCL16_chr17_35971499_35986497	0/1	g0001	154	8	27	88	10	20	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0002	90	39	1	45	0	5	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0003	69	1	11	52	1	4	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0004	25	2	13	8	0	2	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0005	14	1	1	3	0	9	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0006	10	3	2	0	2	3	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0007	9	0	0	9	0	0	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0008	7	0	0	7	0	0	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0009	5	5	0	0	0	0	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0010	5	5	0	0	0	0	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0011	5	5	0	0	0	0	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0012	5	5	0	0	0	0	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0013	4	2	2	0	0	0	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0014	3	0	0	2	0	1	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0015	3	0	1	0	2	0	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0016	3	0	3	0	0	0	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0017	2	2	0	0	0	0	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0018	2	0	1	0	0	1	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0019	2	0	0	2	0	0	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0020	2	0	0	2	0	0	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0021	2	2	0	0	0	0	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0022	2	2	0	0	0	0	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0023	2	2	0	0	0	0	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0024	2	0	0	0	0	2	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0025	2	2	0	0	0	0	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0026	2	1	1	0	0	0	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0027	2	0	2	0	0	0	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0028	2	2	0	0	0	0	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0029	1	1	0	0	0	0	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0030	1	1	0	0	0	0	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0031	1	0	0	0	0	1	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0032	1	0	1	0	0	0	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0033	1	0	1	0	0	0	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0034	1	0	0	1	0	0	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0035	1	0	0	1	0	0	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0036	1	0	0	0	1	0	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0037	1	0	0	0	0	1	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0038	1	0	0	1	0	0	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0039	1	0	1	0	0	0	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0040	1	0	0	1	0	0	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0041	1	1	0	0	0	0	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	g0042	1	1	0	0	0	0	CCL16	chr17	35971499	35986497