JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCL17_chr16_57399767_57421063	0/0	g0093	1	1	0	0	0	0	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	g0094	1	1	0	0	0	0	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	g0095	1	1	0	0	0	0	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	g0096	1	1	0	0	0	0	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	g0097	1	1	0	0	0	0	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	g0098	1	1	0	0	0	0	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	g0099	1	0	1	0	0	0	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	g0100	1	0	0	0	0	1	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	g0101	1	1	0	0	0	0	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	g0102	1	0	0	1	0	0	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	g0103	1	0	0	1	0	0	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	g0104	1	0	1	0	0	0	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	g0105	1	0	1	0	0	0	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	g0106	1	0	0	1	0	0	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	g0107	1	0	0	1	0	0	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	g0108	1	0	0	1	0	0	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	g0109	1	0	0	1	0	0	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	g0110	1	0	0	1	0	0	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	g0111	1	0	0	1	0	0	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	g0112	1	0	0	1	0	0	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	g0113	1	0	0	1	0	0	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	g0114	1	0	0	1	0	0	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	g0115	1	0	0	0	0	1	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	g0116	1	0	0	0	0	1	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	g0117	1	1	0	0	0	0	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	g0118	1	1	0	0	0	0	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	g0119	1	1	0	0	0	0	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	g0120	1	0	0	0	1	0	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	g0121	1	0	1	0	0	0	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	g0122	1	1	0	0	0	0	CCL17	chr16	57399767	57421063
CCL18_chr17_36059272_36077032	0/0	g0001	63	7	8	34	1	13	CCL18	chr17	36059272	36077032
CCL18_chr17_36059272_36077032	0/0	g0002	59	1	9	41	6	2	CCL18	chr17	36059272	36077032
CCL18_chr17_36059272_36077032	0/0	g0003	57	2	16	34	2	3	CCL18	chr17	36059272	36077032
CCL18_chr17_36059272_36077032	0/1	g0004	38	4	11	17	3	2	CCL18	chr17	36059272	36077032
CCL18_chr17_36059272_36077032	0/0	g0005	20	0	7	12	0	1	CCL18	chr17	36059272	36077032
CCL18_chr17_36059272_36077032	0/0	g0006	15	0	1	14	0	0	CCL18	chr17	36059272	36077032
CCL18_chr17_36059272_36077032	0/0	g0007	14	13	0	0	0	1	CCL18	chr17	36059272	36077032
CCL18_chr17_36059272_36077032	0/0	g0008	12	11	1	0	0	0	CCL18	chr17	36059272	36077032
CCL18_chr17_36059272_36077032	0/0	g0009	11	0	0	10	0	1	CCL18	chr17	36059272	36077032
CCL18_chr17_36059272_36077032	0/0	g0010	10	1	0	8	1	0	CCL18	chr17	36059272	36077032
CCL18_chr17_36059272_36077032	0/0	g0011	10	0	4	2	0	4	CCL18	chr17	36059272	36077032
CCL18_chr17_36059272_36077032	0/0	g0012	9	0	1	8	0	0	CCL18	chr17	36059272	36077032
CCL18_chr17_36059272_36077032	0/0	g0013	9	0	0	9	0	0	CCL18	chr17	36059272	36077032
CCL18_chr17_36059272_36077032	0/0	g0014	9	0	3	4	2	0	CCL18	chr17	36059272	36077032
CCL18_chr17_36059272_36077032	0/0	g0015	8	7	1	0	0	0	CCL18	chr17	36059272	36077032
CCL18_chr17_36059272_36077032	0/0	g0016	8	1	2	0	0	5	CCL18	chr17	36059272	36077032
CCL18_chr17_36059272_36077032	0/0	g0017	8	1	7	0	0	0	CCL18	chr17	36059272	36077032
CCL18_chr17_36059272_36077032	0/0	g0018	6	5	1	0	0	0	CCL18	chr17	36059272	36077032
CCL18_chr17_36059272_36077032	0/0	g0019	5	5	0	0	0	0	CCL18	chr17	36059272	36077032
CCL18_chr17_36059272_36077032	0/0	g0020	4	4	0	0	0	0	CCL18	chr17	36059272	36077032