JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCL18_chr17_36059272_36077032	0/0	g0071	1	1	0	0	0	0	CCL18	chr17	36059272	36077032
CCL18_chr17_36059272_36077032	0/0	g0072	1	0	0	1	0	0	CCL18	chr17	36059272	36077032
CCL18_chr17_36059272_36077032	0/0	g0073	1	0	0	1	0	0	CCL18	chr17	36059272	36077032
CCL18_chr17_36059272_36077032	0/0	g0074	1	0	0	0	0	1	CCL18	chr17	36059272	36077032
CCL18_chr17_36059272_36077032	0/0	g0075	1	1	0	0	0	0	CCL18	chr17	36059272	36077032
CCL19_chr9_34684570_34696276	0/1	g0001	122	17	24	56	8	16	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0002	60	20	12	22	2	4	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0003	32	8	14	8	2	0	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	1/0	g0004	29	14	1	9	1	3	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0005	27	0	13	9	1	4	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0006	15	12	0	2	0	1	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0007	14	0	0	14	0	0	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0008	13	1	1	4	1	6	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0009	9	0	4	0	0	5	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0010	9	7	2	0	0	0	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0011	7	6	1	0	0	0	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0012	6	0	3	1	1	1	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0013	5	0	3	2	0	0	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0014	5	5	0	0	0	0	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0015	4	0	0	4	0	0	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0016	3	0	0	3	0	0	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0017	3	0	0	3	0	0	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0018	3	0	2	0	1	0	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0019	3	3	0	0	0	0	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0020	2	0	0	2	0	0	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0021	2	0	0	2	0	0	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0022	2	0	2	0	0	0	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0023	2	1	0	1	0	0	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0024	2	0	0	1	0	1	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0025	2	0	1	0	0	1	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0026	2	0	1	0	0	1	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0027	2	0	0	0	0	2	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0028	2	0	1	0	0	1	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0029	2	0	0	0	1	1	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0030	1	1	0	0	0	0	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0031	1	0	0	1	0	0	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0032	1	1	0	0	0	0	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0033	1	1	0	0	0	0	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0034	1	0	1	0	0	0	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0035	1	0	0	1	0	0	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0036	1	1	0	0	0	0	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0037	1	0	0	0	0	1	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0038	1	0	0	1	0	0	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0039	1	0	0	1	0	0	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	g0040	1	0	0	1	0	0	CCL19	chr9	34684570	34696276
CCL1_chr17_34355328_34368233	0/0	g0001	141	6	42	78	6	9	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0002	117	16	12	70	2	17	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0003	26	2	1	20	1	2	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	1/0	g0004	25	23	1	0	0	0	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0005	19	0	6	5	2	6	CCL1	chr17	34355328	34368233