JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCL1_chr17_34355328_34368233	0/0	g0006	9	7	2	0	0	0	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/1	g0007	9	0	5	3	0	0	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0008	6	0	3	0	1	2	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0009	5	3	0	0	0	2	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0010	5	4	1	0	0	0	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0011	5	5	0	0	0	0	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0012	5	4	1	0	0	0	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0013	4	0	0	4	0	0	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0014	3	0	1	0	0	2	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0015	2	0	2	0	0	0	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0016	2	2	0	0	0	0	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0017	2	2	0	0	0	0	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0018	2	0	0	2	0	0	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0019	2	0	1	0	0	1	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0020	2	1	1	0	0	0	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0021	2	2	0	0	0	0	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0022	2	0	0	0	2	0	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0023	1	1	0	0	0	0	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0024	1	0	1	0	0	0	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0025	1	0	1	0	0	0	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0026	1	0	0	1	0	0	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0027	1	0	1	0	0	0	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0028	1	0	0	1	0	0	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0029	1	0	1	0	0	0	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0030	1	0	0	1	0	0	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0031	1	0	0	1	0	0	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0032	1	0	0	1	0	0	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0033	1	0	1	0	0	0	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0034	1	0	0	1	0	0	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0035	1	0	0	0	0	1	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0036	1	0	0	1	0	0	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0037	1	1	0	0	0	0	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0038	1	1	0	0	0	0	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0039	1	1	0	0	0	0	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0040	1	1	0	0	0	0	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0041	1	0	0	1	0	0	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0042	1	1	0	0	0	0	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	g0043	1	1	0	0	0	0	CCL1	chr17	34355328	34368233
CCL20_chr2_227808842_227822556	0/1	g0001	294	37	55	152	15	34	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	1/0	g0002	39	10	1	18	1	8	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	g0003	34	0	14	16	0	4	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	g0004	20	20	0	0	0	0	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	g0005	8	8	0	0	0	0	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	g0006	7	7	0	0	0	0	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	g0007	6	0	2	4	0	0	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	g0008	4	0	3	0	0	1	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	g0009	4	0	4	0	0	0	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	g0010	4	4	0	0	0	0	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	g0011	2	2	0	0	0	0	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	g0012	2	0	0	2	0	0	CCL20	chr2	227808842	227822556