JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCL20_chr2_227808842_227822556	0/0	g0013	2	0	1	1	0	0	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	g0014	2	2	0	0	0	0	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	g0015	1	0	1	0	0	0	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	g0016	1	0	0	1	0	0	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	g0017	1	0	1	0	0	0	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	g0018	1	1	0	0	0	0	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	g0019	1	0	0	1	0	0	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	g0020	1	0	0	1	0	0	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	g0021	1	0	0	0	0	1	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	g0022	1	0	0	1	0	0	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	g0023	1	0	0	1	0	0	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	g0024	1	1	0	0	0	0	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	g0025	1	1	0	0	0	0	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	g0026	1	0	0	1	0	0	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	g0027	1	0	0	1	0	0	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	g0028	1	0	0	1	0	0	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	g0029	1	1	0	0	0	0	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	g0030	1	0	0	1	0	0	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	g0031	1	1	0	0	0	0	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	g0032	1	1	0	0	0	0	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	g0033	1	1	0	0	0	0	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	g0034	1	1	0	0	0	0	CCL20	chr2	227808842	227822556
CCL21_chr9_34704005_34715136	1/1	g0001	378	78	64	182	16	36	CCL21	chr9	34704005	34715136
CCL21_chr9_34704005_34715136	0/0	g0002	40	3	15	8	2	12	CCL21	chr9	34704005	34715136
CCL21_chr9_34704005_34715136	0/0	g0003	6	6	0	0	0	0	CCL21	chr9	34704005	34715136
CCL21_chr9_34704005_34715136	0/0	g0004	4	0	4	0	0	0	CCL21	chr9	34704005	34715136
CCL21_chr9_34704005_34715136	0/0	g0005	3	3	0	0	0	0	CCL21	chr9	34704005	34715136
CCL21_chr9_34704005_34715136	0/0	g0006	1	0	0	1	0	0	CCL21	chr9	34704005	34715136
CCL21_chr9_34704005_34715136	0/0	g0007	1	1	0	0	0	0	CCL21	chr9	34704005	34715136
CCL21_chr9_34704005_34715136	0/0	g0008	1	0	1	0	0	0	CCL21	chr9	34704005	34715136
CCL21_chr9_34704005_34715136	0/0	g0009	1	1	0	0	0	0	CCL21	chr9	34704005	34715136
CCL21_chr9_34704005_34715136	0/0	g0010	1	0	0	1	0	0	CCL21	chr9	34704005	34715136
CCL22_chr16_57353783_57371189	0/0	g0001	110	1	26	69	4	10	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0002	48	0	0	47	0	1	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	1/0	g0003	44	4	15	24	0	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0004	33	16	9	1	2	5	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0005	25	0	0	19	0	6	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/1	g0006	24	0	4	10	1	8	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0007	23	23	0	0	0	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0008	12	12	0	0	0	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0009	10	0	5	5	0	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0010	10	0	4	4	1	1	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0011	8	8	0	0	0	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0012	7	7	0	0	0	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0013	6	0	2	4	0	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0014	6	6	0	0	0	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0015	6	1	4	0	0	1	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0016	5	4	0	1	0	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0017	5	0	0	5	0	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0018	4	0	3	0	0	1	CCL22	chr16	57353783	57371189