JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCL22_chr16_57353783_57371189	0/0	g0019	3	0	0	0	0	3	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0020	3	0	0	1	1	1	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0021	3	3	0	0	0	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0022	2	0	0	2	0	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0023	2	0	0	0	2	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0024	2	0	2	0	0	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0025	2	0	1	1	0	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0026	2	1	1	0	0	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0027	2	0	1	0	0	1	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0028	2	0	0	0	0	2	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0029	1	0	0	1	0	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0030	1	0	0	0	0	1	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0031	1	1	0	0	0	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0032	1	1	0	0	0	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0033	1	1	0	0	0	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0034	1	0	0	0	0	1	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0035	1	0	0	0	0	1	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0036	1	0	0	1	0	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0037	1	0	0	0	0	1	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0038	1	0	0	0	0	1	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0039	1	0	0	1	0	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0040	1	0	0	0	1	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0041	1	1	0	0	0	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0042	1	0	0	1	0	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0043	1	1	0	0	0	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0044	1	1	0	0	0	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0045	1	0	0	1	0	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0046	1	1	0	0	0	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0047	1	0	1	0	0	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0048	1	1	0	0	0	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0049	1	1	0	0	0	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0050	1	1	0	0	0	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0051	1	1	0	0	0	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0052	1	1	0	0	0	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0053	1	0	0	1	0	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0054	1	0	0	1	0	0	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	g0055	1	0	0	0	0	1	CCL22	chr16	57353783	57371189
CCL23_chr17_36008058_36022972	0/0	g0001	165	7	43	87	9	19	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0002	79	31	11	24	3	10	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0003	63	3	3	49	0	8	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0004	11	0	2	9	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0005	11	11	0	0	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0006	9	9	0	0	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0007	8	0	3	5	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/1	g0008	7	0	6	0	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0009	5	5	0	0	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0010	4	0	0	4	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0011	4	4	0	0	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0012	3	0	0	2	0	1	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0013	3	0	0	3	0	0	CCL23	chr17	36008058	36022972