JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCL23_chr17_36008058_36022972	0/0	g0014	3	3	0	0	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0015	3	1	2	0	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0016	2	0	2	0	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0017	2	1	0	0	0	1	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0018	2	0	0	2	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0019	2	2	0	0	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0020	2	2	0	0	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0021	2	2	0	0	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0022	2	0	0	2	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0023	2	0	0	0	0	2	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0024	1	0	1	0	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0025	1	0	0	1	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0026	1	1	0	0	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0027	1	0	0	1	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0028	1	0	1	0	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0029	1	0	0	0	1	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0030	1	0	0	0	1	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0031	1	0	0	1	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0032	1	0	0	1	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0033	1	0	0	0	0	1	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0034	1	0	0	1	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0035	1	1	0	0	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0036	1	1	0	0	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0037	1	1	0	0	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0038	1	1	0	0	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0039	1	1	0	0	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0040	1	0	1	0	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0041	1	1	0	0	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0042	1	1	0	0	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0043	1	1	0	0	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0044	1	1	0	0	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0045	1	1	0	0	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0046	1	0	0	1	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0047	1	0	0	1	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0048	1	1	0	0	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0049	1	0	1	0	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0050	1	1	0	0	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0051	1	0	0	1	0	0	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	g0052	1	0	0	1	0	0	CCL23	chr17	36008058	36022972
CCL24_chr7_75805825_75818806	1/0	g0001	61	31	13	4	3	9	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	g0002	41	5	9	23	1	3	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	g0003	40	1	4	34	0	1	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	g0004	26	5	7	12	0	2	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	g0005	19	0	0	19	0	0	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	g0006	17	1	4	5	1	6	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	g0007	13	2	8	0	1	2	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	g0008	11	0	0	11	0	0	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	g0009	10	0	0	10	0	0	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	g0010	10	0	4	6	0	0	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	g0011	8	6	1	1	0	0	CCL24	chr7	75805825	75818806