JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCL26_chr7_75764538_75777211	0/0	g0032	1	1	0	0	0	0	CCL26	chr7	75764538	75777211
CCL26_chr7_75764538_75777211	0/0	g0033	1	0	1	0	0	0	CCL26	chr7	75764538	75777211
CCL26_chr7_75764538_75777211	0/0	g0034	1	0	0	1	0	0	CCL26	chr7	75764538	75777211
CCL26_chr7_75764538_75777211	0/0	g0035	1	1	0	0	0	0	CCL26	chr7	75764538	75777211
CCL26_chr7_75764538_75777211	0/0	g0036	1	1	0	0	0	0	CCL26	chr7	75764538	75777211
CCL26_chr7_75764538_75777211	0/0	g0037	1	1	0	0	0	0	CCL26	chr7	75764538	75777211
CCL26_chr7_75764538_75777211	0/0	g0038	1	1	0	0	0	0	CCL26	chr7	75764538	75777211
CCL26_chr7_75764538_75777211	0/0	g0039	1	1	0	0	0	0	CCL26	chr7	75764538	75777211
CCL26_chr7_75764538_75777211	0/0	g0040	1	0	0	1	0	0	CCL26	chr7	75764538	75777211
CCL27_chr9_34656890_34667657	1/1	g0001	330	65	70	149	10	34	CCL27	chr9	34656890	34667657
CCL27_chr9_34656890_34667657	0/0	g0002	15	0	4	1	4	6	CCL27	chr9	34656890	34667657
CCL27_chr9_34656890_34667657	0/0	g0003	10	5	1	0	0	4	CCL27	chr9	34656890	34667657
CCL27_chr9_34656890_34667657	0/0	g0004	10	9	1	0	0	0	CCL27	chr9	34656890	34667657
CCL27_chr9_34656890_34667657	0/0	g0005	6	6	0	0	0	0	CCL27	chr9	34656890	34667657
CCL27_chr9_34656890_34667657	0/0	g0006	5	5	0	0	0	0	CCL27	chr9	34656890	34667657
CCL27_chr9_34656890_34667657	0/0	g0007	3	0	0	3	0	0	CCL27	chr9	34656890	34667657
CCL27_chr9_34656890_34667657	0/0	g0008	2	0	0	0	0	2	CCL27	chr9	34656890	34667657
CCL27_chr9_34656890_34667657	0/0	g0009	1	0	0	1	0	0	CCL27	chr9	34656890	34667657
CCL28_chr5_43374193_43417391	0/0	g0001	38	0	2	34	1	1	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0002	29	3	8	6	3	9	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0003	10	0	0	10	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0004	10	0	3	7	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0005	10	0	0	10	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0006	10	0	4	2	0	4	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0007	6	0	4	0	1	1	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0008	5	1	2	0	0	2	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0009	5	0	0	5	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0010	5	4	1	0	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0011	5	5	0	0	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0012	4	0	2	0	0	2	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0013	4	4	0	0	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0014	4	4	0	0	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0015	3	3	0	0	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0016	3	0	1	2	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0017	3	2	1	0	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0018	3	0	3	0	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/1	g0019	3	0	2	0	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0020	3	0	0	3	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0021	3	1	2	0	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0022	3	0	0	3	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0023	3	0	0	0	0	3	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0024	3	3	0	0	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0025	2	2	0	0	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0026	2	2	0	0	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0027	2	0	2	0	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0028	2	0	0	2	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0029	2	2	0	0	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0030	2	0	0	0	2	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0031	2	0	2	0	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0032	2	2	0	0	0	0	CCL28	chr5	43374193	43417391