JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCL28_chr5_43374193_43417391	0/0	g0133	1	0	1	0	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0134	1	0	0	0	0	1	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0135	1	1	0	0	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0136	1	1	0	0	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0137	1	0	1	0	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0138	1	1	0	0	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0139	1	1	0	0	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0140	1	0	0	0	0	1	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0141	1	0	0	1	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0142	1	1	0	0	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0143	1	1	0	0	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0144	1	1	0	0	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0145	1	1	0	0	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0146	1	1	0	0	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0147	1	1	0	0	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0148	1	1	0	0	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0149	1	0	1	0	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0150	1	1	0	0	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0151	1	1	0	0	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0152	1	0	1	0	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0153	1	1	0	0	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0154	1	1	0	0	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0155	1	1	0	0	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0156	1	1	0	0	0	0	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	g0157	1	1	0	0	0	0	CCL28	chr5	43374193	43417391
CCL2_chr17_34250285_34262203	0/1	g0001	193	54	37	74	6	21	CCL2	chr17	34250285	34262203
CCL2_chr17_34250285_34262203	0/0	g0002	188	34	35	100	5	14	CCL2	chr17	34250285	34262203
CCL2_chr17_34250285_34262203	1/0	g0003	45	2	9	20	5	8	CCL2	chr17	34250285	34262203
CCL2_chr17_34250285_34262203	0/0	g0004	3	0	0	1	0	2	CCL2	chr17	34250285	34262203
CCL2_chr17_34250285_34262203	0/0	g0005	1	1	0	0	0	0	CCL2	chr17	34250285	34262203
CCL2_chr17_34250285_34262203	0/0	g0006	1	0	1	0	0	0	CCL2	chr17	34250285	34262203
CCL2_chr17_34250285_34262203	0/0	g0007	1	0	0	0	0	1	CCL2	chr17	34250285	34262203
CCL2_chr17_34250285_34262203	0/0	g0008	1	1	0	0	0	0	CCL2	chr17	34250285	34262203
CCL2_chr17_34250285_34262203	0/0	g0009	1	0	0	1	0	0	CCL2	chr17	34250285	34262203
CCL3L3_chr17_36189869_36201758	0/0	g0001	29	0	8	11	3	7	CCL3L3	chr17	36189869	36201758
CCL3L3_chr17_36189869_36201758	0/0	g0002	22	1	1	20	0	0	CCL3L3	chr17	36189869	36201758
CCL3L3_chr17_36189869_36201758	0/0	g0003	17	0	6	10	0	1	CCL3L3	chr17	36189869	36201758
CCL3L3_chr17_36189869_36201758	0/0	g0004	15	0	4	10	0	1	CCL3L3	chr17	36189869	36201758
CCL3L3_chr17_36189869_36201758	0/0	g0005	15	0	3	8	1	3	CCL3L3	chr17	36189869	36201758
CCL3L3_chr17_36189869_36201758	0/0	g0006	11	0	0	9	0	2	CCL3L3	chr17	36189869	36201758
CCL3L3_chr17_36189869_36201758	0/0	g0007	10	0	10	0	0	0	CCL3L3	chr17	36189869	36201758
CCL3L3_chr17_36189869_36201758	0/0	g0008	6	3	1	1	0	1	CCL3L3	chr17	36189869	36201758
CCL3L3_chr17_36189869_36201758	0/0	g0009	5	0	0	0	2	3	CCL3L3	chr17	36189869	36201758
CCL3L3_chr17_36189869_36201758	0/0	g0010	5	0	0	5	0	0	CCL3L3	chr17	36189869	36201758
CCL3L3_chr17_36189869_36201758	0/0	g0011	5	5	0	0	0	0	CCL3L3	chr17	36189869	36201758
CCL3L3_chr17_36189869_36201758	0/0	g0012	3	3	0	0	0	0	CCL3L3	chr17	36189869	36201758
CCL3L3_chr17_36189869_36201758	0/0	g0013	2	2	0	0	0	0	CCL3L3	chr17	36189869	36201758
CCL3L3_chr17_36189869_36201758	0/0	g0014	1	0	1	0	0	0	CCL3L3	chr17	36189869	36201758
CCL3L3_chr17_36189869_36201758	0/0	g0015	1	1	0	0	0	0	CCL3L3	chr17	36189869	36201758
CCL3L3_chr17_36189869_36201758	0/0	g0016	1	1	0	0	0	0	CCL3L3	chr17	36189869	36201758