JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCL3L3_chr17_36189869_36201758	0/0	g0017	1	0	0	0	0	1	CCL3L3	chr17	36189869	36201758
CCL3L3_chr17_36189869_36201758	0/0	g0018	1	1	0	0	0	0	CCL3L3	chr17	36189869	36201758
CCL3L3_chr17_36189869_36201758	0/0	g0019	1	0	1	0	0	0	CCL3L3	chr17	36189869	36201758
CCL3L3_chr17_36189869_36201758	0/0	g0020	1	0	1	0	0	0	CCL3L3	chr17	36189869	36201758
CCL3L3_chr17_36189869_36201758	0/0	g0021	1	0	0	1	0	0	CCL3L3	chr17	36189869	36201758
CCL3L3_chr17_36189869_36201758	0/0	g0022	1	0	0	0	0	1	CCL3L3	chr17	36189869	36201758
CCL3L3_chr17_36189869_36201758	0/0	g0023	1	0	0	1	0	0	CCL3L3	chr17	36189869	36201758
CCL3L3_chr17_36189869_36201758	0/0	g0024	1	1	0	0	0	0	CCL3L3	chr17	36189869	36201758
CCL3L3_chr17_36189869_36201758	0/0	g0025	1	0	0	0	0	1	CCL3L3	chr17	36189869	36201758
CCL3L3_chr17_36189869_36201758	0/0	g0026	1	0	0	0	0	1	CCL3L3	chr17	36189869	36201758
CCL3_chr17_36083256_36095143	0/1	g0001	231	41	37	120	10	22	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	g0002	70	2	9	44	6	9	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	g0003	14	0	2	12	0	0	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	g0004	8	8	0	0	0	0	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	g0005	8	8	0	0	0	0	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	g0006	6	6	0	0	0	0	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	g0007	6	0	1	3	0	2	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	g0008	5	5	0	0	0	0	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	g0009	3	0	0	1	0	2	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	g0010	3	3	0	0	0	0	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	g0011	3	3	0	0	0	0	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	g0012	2	2	0	0	0	0	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	g0013	2	2	0	0	0	0	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	g0014	2	2	0	0	0	0	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	g0015	2	1	1	0	0	0	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	g0016	2	0	0	2	0	0	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	g0017	1	0	0	0	0	1	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	g0018	1	0	0	0	0	1	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	g0019	1	0	1	0	0	0	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	g0020	1	0	0	1	0	0	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	g0021	1	1	0	0	0	0	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	g0022	1	1	0	0	0	0	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	g0023	1	0	0	1	0	0	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	g0024	1	1	0	0	0	0	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	g0025	1	1	0	0	0	0	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	g0026	1	0	0	0	0	1	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	g0027	1	0	1	0	0	0	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	g0028	1	0	0	1	0	0	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	g0029	1	0	0	1	0	0	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	g0030	1	1	0	0	0	0	CCL3	chr17	36083256	36095143
CCL4L2_chr17_36206063_36217873	0/0	g0001	43	5	16	12	2	8	CCL4L2	chr17	36206063	36217873
CCL4L2_chr17_36206063_36217873	0/0	g0002	32	1	10	17	1	3	CCL4L2	chr17	36206063	36217873
CCL4L2_chr17_36206063_36217873	0/0	g0003	20	1	1	15	0	3	CCL4L2	chr17	36206063	36217873
CCL4L2_chr17_36206063_36217873	0/0	g0004	16	0	2	12	0	2	CCL4L2	chr17	36206063	36217873
CCL4L2_chr17_36206063_36217873	0/0	g0005	11	1	2	7	0	1	CCL4L2	chr17	36206063	36217873
CCL4L2_chr17_36206063_36217873	0/0	g0006	11	0	0	7	0	4	CCL4L2	chr17	36206063	36217873
CCL4L2_chr17_36206063_36217873	0/0	g0007	7	5	2	0	0	0	CCL4L2	chr17	36206063	36217873
CCL4L2_chr17_36206063_36217873	0/0	g0008	5	1	0	0	2	2	CCL4L2	chr17	36206063	36217873
CCL4L2_chr17_36206063_36217873	0/0	g0009	3	3	0	0	0	0	CCL4L2	chr17	36206063	36217873
CCL4L2_chr17_36206063_36217873	0/0	g0010	2	0	0	2	0	0	CCL4L2	chr17	36206063	36217873