JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCL4L2_chr17_36206063_36217873	0/0	g0011	1	0	0	0	0	1	CCL4L2	chr17	36206063	36217873
CCL4L2_chr17_36206063_36217873	0/0	g0012	1	0	0	0	1	0	CCL4L2	chr17	36206063	36217873
CCL4L2_chr17_36206063_36217873	0/0	g0013	1	0	0	1	0	0	CCL4L2	chr17	36206063	36217873
CCL4L2_chr17_36206063_36217873	0/0	g0014	1	1	0	0	0	0	CCL4L2	chr17	36206063	36217873
CCL4L2_chr17_36206063_36217873	0/0	g0015	1	0	0	1	0	0	CCL4L2	chr17	36206063	36217873
CCL4L2_chr17_36206063_36217873	0/0	g0016	1	0	1	0	0	0	CCL4L2	chr17	36206063	36217873
CCL4_chr17_36098827_36110614	0/1	g0001	153	5	35	95	5	12	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	g0002	76	2	12	45	7	10	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	g0003	72	34	10	24	1	3	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	g0004	48	16	10	7	5	10	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	g0005	8	8	0	0	0	0	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	g0006	7	0	1	6	0	0	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	g0007	6	0	6	0	0	0	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	g0008	5	5	0	0	0	0	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	g0009	4	4	0	0	0	0	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	g0010	4	0	4	0	0	0	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	g0011	3	0	0	3	0	0	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	g0012	3	0	0	3	0	0	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	g0013	3	3	0	0	0	0	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	g0014	2	1	1	0	0	0	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	g0015	2	2	0	0	0	0	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	g0016	2	1	0	1	0	0	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	g0017	2	2	0	0	0	0	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	g0018	1	0	0	1	0	0	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	g0019	1	1	0	0	0	0	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	g0020	1	1	0	0	0	0	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	g0021	1	1	0	0	0	0	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	g0022	1	0	0	0	0	1	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	g0023	1	0	0	0	0	1	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	g0024	1	0	1	0	0	0	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	g0025	1	1	0	0	0	0	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	g0026	1	1	0	0	0	0	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	g0027	1	0	0	1	0	0	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	g0028	1	1	0	0	0	0	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	g0029	1	1	0	0	0	0	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	g0030	1	0	0	0	0	1	CCL4	chr17	36098827	36110614
CCL5_chr17_35866491_35885360	0/0	g0001	101	18	16	42	9	16	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	g0002	25	1	7	16	0	1	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	g0003	20	3	6	10	0	1	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	g0004	14	1	1	12	0	0	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	g0005	9	0	5	4	0	0	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	g0006	8	1	2	5	0	0	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	g0007	8	8	0	0	0	0	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	g0008	7	6	1	0	0	0	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	g0009	7	2	0	4	0	1	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	g0010	7	1	1	5	0	0	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	g0011	6	0	1	5	0	0	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	g0012	6	1	0	4	0	1	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	g0013	5	0	0	5	0	0	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	g0014	4	0	0	4	0	0	CCL5	chr17	35866491	35885360