JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCL5_chr17_35866491_35885360	0/0	g0115	1	0	0	0	0	1	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	g0116	1	1	0	0	0	0	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	g0117	1	1	0	0	0	0	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	g0118	1	1	0	0	0	0	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	g0119	1	1	0	0	0	0	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	g0120	1	0	0	1	0	0	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	g0121	1	0	0	1	0	0	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	g0122	1	0	1	0	0	0	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	g0123	1	1	0	0	0	0	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	g0124	1	1	0	0	0	0	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	g0125	1	0	0	1	0	0	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	g0126	1	0	0	1	0	0	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	g0127	1	1	0	0	0	0	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	g0128	1	0	0	1	0	0	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	g0129	1	1	0	0	0	0	CCL5	chr17	35866491	35885360
CCL7_chr17_34265221_34277242	1/0	g0001	332	65	55	163	14	34	CCL7	chr17	34265221	34277242
CCL7_chr17_34265221_34277242	0/1	g0002	37	2	14	16	2	2	CCL7	chr17	34265221	34277242
CCL7_chr17_34265221_34277242	0/0	g0003	20	18	2	0	0	0	CCL7	chr17	34265221	34277242
CCL7_chr17_34265221_34277242	0/0	g0004	12	0	9	0	0	3	CCL7	chr17	34265221	34277242
CCL7_chr17_34265221_34277242	0/0	g0005	8	0	0	8	0	0	CCL7	chr17	34265221	34277242
CCL7_chr17_34265221_34277242	0/0	g0006	7	0	0	7	0	0	CCL7	chr17	34265221	34277242
CCL7_chr17_34265221_34277242	0/0	g0007	4	4	0	0	0	0	CCL7	chr17	34265221	34277242
CCL7_chr17_34265221_34277242	0/0	g0008	2	1	0	0	0	1	CCL7	chr17	34265221	34277242
CCL7_chr17_34265221_34277242	0/0	g0009	2	0	0	2	0	0	CCL7	chr17	34265221	34277242
CCL7_chr17_34265221_34277242	0/0	g0010	1	0	0	0	0	1	CCL7	chr17	34265221	34277242
CCL7_chr17_34265221_34277242	0/0	g0011	1	1	0	0	0	0	CCL7	chr17	34265221	34277242
CCL7_chr17_34265221_34277242	0/0	g0012	1	0	0	0	0	1	CCL7	chr17	34265221	34277242
CCL7_chr17_34265221_34277242	0/0	g0013	1	1	0	0	0	0	CCL7	chr17	34265221	34277242
CCL8_chr17_34314435_34326402	1/1	g0001	301	80	54	132	11	22	CCL8	chr17	34314435	34326402
CCL8_chr17_34314435_34326402	0/0	g0002	113	6	19	68	5	15	CCL8	chr17	34314435	34326402
CCL8_chr17_34314435_34326402	0/0	g0003	2	2	0	0	0	0	CCL8	chr17	34314435	34326402
CCL8_chr17_34314435_34326402	0/0	g0004	1	1	0	0	0	0	CCL8	chr17	34314435	34326402
CCL8_chr17_34314435_34326402	0/0	g0005	1	0	0	0	0	1	CCL8	chr17	34314435	34326402
CCL8_chr17_34314435_34326402	0/0	g0006	1	0	0	0	0	1	CCL8	chr17	34314435	34326402
CCL8_chr17_34314435_34326402	0/0	g0007	1	0	0	1	0	0	CCL8	chr17	34314435	34326402
CCL8_chr17_34314435_34326402	0/0	g0008	1	0	0	1	0	0	CCL8	chr17	34314435	34326402
CCL8_chr17_34314435_34326402	0/0	g0009	1	1	0	0	0	0	CCL8	chr17	34314435	34326402
CCL8_chr17_34314435_34326402	0/0	g0010	1	0	1	0	0	0	CCL8	chr17	34314435	34326402
CCL8_chr17_34314435_34326402	0/0	g0011	1	0	0	0	0	1	CCL8	chr17	34314435	34326402
CCM2L_chr20_32005438_32037180	1/1	g0001	45	6	22	7	4	4	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	g0002	11	0	2	8	0	1	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	g0003	8	0	0	7	0	1	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	g0004	6	5	1	0	0	0	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	g0005	6	0	4	2	0	0	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	g0006	5	0	0	4	0	1	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	g0007	5	5	0	0	0	0	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	g0008	4	1	3	0	0	0	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	g0009	4	4	0	0	0	0	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	g0010	4	1	2	0	0	1	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	g0011	4	0	2	0	0	2	CCM2L	chr20	32005438	32037180