JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCM2_chr7_44995201_45081453	0/0	g0295	1	0	1	0	0	0	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	g0296	1	0	0	1	0	0	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	g0297	1	0	0	1	0	0	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	g0298	1	0	0	1	0	0	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	g0299	1	0	0	0	0	1	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	g0300	1	0	0	0	1	0	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	g0301	1	1	0	0	0	0	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	g0302	1	0	0	1	0	0	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	g0303	1	0	0	1	0	0	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	g0304	1	0	0	0	0	1	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	g0305	1	1	0	0	0	0	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	g0306	1	1	0	0	0	0	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	g0307	1	1	0	0	0	0	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	g0308	1	1	0	0	0	0	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	g0309	1	1	0	0	0	0	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	g0310	1	0	1	0	0	0	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	g0311	1	1	0	0	0	0	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	g0312	1	1	0	0	0	0	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	g0313	1	0	1	0	0	0	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	g0314	1	0	0	1	0	0	CCM2	chr7	44995201	45081453
CCN1_chr1_85575761_85588950	1/1	g0001	203	52	28	103	7	11	CCN1	chr1	85575761	85588950
CCN1_chr1_85575761_85588950	0/0	g0002	186	33	44	81	7	21	CCN1	chr1	85575761	85588950
CCN1_chr1_85575761_85588950	0/0	g0003	61	1	13	37	4	6	CCN1	chr1	85575761	85588950
CCN1_chr1_85575761_85588950	0/0	g0004	15	12	1	0	0	2	CCN1	chr1	85575761	85588950
CCN1_chr1_85575761_85588950	0/0	g0005	1	0	0	1	0	0	CCN1	chr1	85575761	85588950
CCN2_chr6_131943176_131956372	0/0	g0001	211	18	29	123	8	33	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	g0002	105	18	24	57	3	3	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	g0003	65	21	13	24	4	3	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	g0004	8	5	0	1	0	2	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	g0005	6	0	5	0	0	1	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	g0006	6	6	0	0	0	0	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	g0007	5	5	0	0	0	0	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	g0008	5	5	0	0	0	0	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	g0009	4	3	1	0	0	0	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	g0010	4	3	1	0	0	0	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	g0011	3	3	0	0	0	0	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	g0012	2	0	0	0	1	1	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	g0013	2	2	0	0	0	0	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	g0014	2	1	0	1	0	0	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	g0015	2	0	2	0	0	0	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	g0016	2	0	0	2	0	0	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	g0017	1	1	0	0	0	0	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	1/0	g0018	1	0	0	0	0	0	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	g0019	1	0	0	0	0	1	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	g0020	1	0	0	1	0	0	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	g0021	1	1	0	0	0	0	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	g0022	1	0	1	0	0	0	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	g0023	1	0	0	1	0	0	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	g0024	1	1	0	0	0	0	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	g0025	1	0	1	0	0	0	CCN2	chr6	131943176	131956372