JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCN2_chr6_131943176_131956372	0/1	g0026	1	0	0	0	0	0	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	g0027	1	1	0	0	0	0	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	g0028	1	0	1	0	0	0	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	g0029	1	0	0	0	0	1	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	g0030	1	0	0	0	0	1	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	g0031	1	1	0	0	0	0	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	g0032	1	1	0	0	0	0	CCN2	chr6	131943176	131956372
CCN3_chr8_119411446_119429434	1/1	g0001	168	19	40	88	3	16	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0002	24	1	0	19	0	4	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0003	22	8	9	0	4	1	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0004	15	14	1	0	0	0	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0005	12	4	0	8	0	0	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0006	11	6	2	0	0	3	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0007	9	0	0	9	0	0	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0008	8	0	0	8	0	0	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0009	6	0	6	0	0	0	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0010	6	1	1	3	1	0	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0011	5	4	1	0	0	0	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0012	5	4	0	1	0	0	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0013	4	4	0	0	0	0	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0014	3	3	0	0	0	0	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0015	3	3	0	0	0	0	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0016	2	2	0	0	0	0	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0017	2	0	0	0	0	2	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0018	2	2	0	0	0	0	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0019	2	0	0	2	0	0	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0020	2	2	0	0	0	0	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0021	2	0	0	2	0	0	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0022	2	1	0	0	0	1	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0023	2	2	0	0	0	0	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0024	2	2	0	0	0	0	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0025	1	0	0	1	0	0	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0026	1	0	0	1	0	0	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0027	1	0	0	1	0	0	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0028	1	0	0	1	0	0	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0029	1	1	0	0	0	0	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0030	1	0	1	0	0	0	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0031	1	0	0	1	0	0	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0032	1	0	0	1	0	0	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0033	1	0	1	0	0	0	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0034	1	0	0	1	0	0	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0035	1	0	1	0	0	0	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0036	1	0	0	1	0	0	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0037	1	0	0	1	0	0	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0038	1	0	0	0	0	1	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0039	1	1	0	0	0	0	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0040	1	0	0	1	0	0	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0041	1	0	0	0	0	1	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0042	1	0	1	0	0	0	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	g0043	1	0	1	0	0	0	CCN3	chr8	119411446	119429434