JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCN5_chr20_44710369_44732811	0/0	g0163	1	0	1	0	0	0	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	g0164	1	0	0	1	0	0	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	g0165	1	1	0	0	0	0	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	g0166	1	1	0	0	0	0	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	g0167	1	1	0	0	0	0	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	g0168	1	0	0	1	0	0	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	g0169	1	1	0	0	0	0	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	g0170	1	0	0	0	0	1	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	g0171	1	0	0	1	0	0	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	g0172	1	0	0	1	0	0	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	g0173	1	1	0	0	0	0	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	g0174	1	1	0	0	0	0	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	g0175	1	0	0	1	0	0	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	g0176	1	0	0	0	1	0	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	g0177	1	1	0	0	0	0	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	g0178	1	1	0	0	0	0	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	g0179	1	1	0	0	0	0	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	g0180	1	0	0	1	0	0	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	g0181	1	1	0	0	0	0	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	g0182	1	1	0	0	0	0	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	g0183	1	0	1	0	0	0	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	g0184	1	1	0	0	0	0	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	g0185	1	1	0	0	0	0	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	g0186	1	0	0	0	0	1	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	g0187	1	1	0	0	0	0	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	g0188	1	0	0	1	0	0	CCN5	chr20	44710369	44732811
CCN6_chr6_112049104_112074686	0/0	g0001	63	5	12	35	3	8	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	1/1	g0002	61	11	17	18	5	8	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0003	49	0	5	36	1	7	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0004	48	7	15	20	3	3	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0005	26	14	2	9	0	1	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0006	24	0	0	23	0	1	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0007	11	0	0	11	0	0	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0008	7	7	0	0	0	0	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0009	6	0	0	6	0	0	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0010	6	0	0	6	0	0	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0011	6	0	0	6	0	0	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0012	6	0	0	5	0	1	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0013	5	5	0	0	0	0	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0014	5	0	3	0	0	2	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0015	4	0	0	3	0	1	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0016	4	0	0	4	0	0	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0017	3	3	0	0	0	0	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0018	3	0	0	3	0	0	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0019	3	0	0	3	0	0	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0020	3	0	2	0	0	1	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0021	2	2	0	0	0	0	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0022	2	0	0	2	0	0	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0023	2	0	0	2	0	0	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0024	2	0	0	2	0	0	CCN6	chr6	112049104	112074686