JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCN6_chr6_112049104_112074686	0/0	g0075	1	0	0	1	0	0	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0076	1	0	0	0	0	1	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0077	1	1	0	0	0	0	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0078	1	0	0	1	0	0	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0079	1	0	1	0	0	0	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0080	1	0	1	0	0	0	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0081	1	1	0	0	0	0	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0082	1	1	0	0	0	0	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0083	1	1	0	0	0	0	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0084	1	1	0	0	0	0	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0085	1	0	0	1	0	0	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0086	1	1	0	0	0	0	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0087	1	0	1	0	0	0	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0088	1	1	0	0	0	0	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0089	1	0	0	1	0	0	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0090	1	0	0	1	0	0	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0091	1	1	0	0	0	0	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0092	1	0	0	1	0	0	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0093	1	0	0	1	0	0	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0094	1	1	0	0	0	0	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0095	1	1	0	0	0	0	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	g0096	1	1	0	0	0	0	CCN6	chr6	112049104	112074686
CCNA1_chr13_36427495_36447870	0/0	g0001	15	2	2	11	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0002	15	1	0	10	2	2	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0003	11	0	6	4	1	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/1	g0004	11	0	1	3	2	4	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0005	10	3	0	6	0	1	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0006	10	0	0	10	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0007	9	2	4	0	3	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0008	9	0	0	6	0	3	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0009	8	2	1	4	0	1	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0010	8	1	2	3	1	1	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0011	8	0	3	3	1	1	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0012	8	0	2	4	0	2	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0013	7	0	2	3	0	2	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0014	7	0	3	3	1	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0015	6	5	1	0	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0016	6	0	1	2	0	3	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0017	6	0	0	6	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0018	6	0	1	5	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0019	6	2	1	1	0	2	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0020	6	1	1	3	0	1	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0021	6	1	0	5	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0022	6	0	1	5	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0023	6	0	2	3	0	1	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0024	5	0	1	3	1	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0025	5	0	0	5	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0026	5	0	1	4	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0027	5	0	5	0	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0028	4	2	0	0	0	2	CCNA1	chr13	36427495	36447870