JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCNA1_chr13_36427495_36447870	0/0	g0029	4	0	0	4	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0030	4	0	0	4	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0031	4	0	3	1	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0032	3	0	3	0	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0033	3	0	1	0	0	2	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0034	3	3	0	0	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0035	3	3	0	0	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0036	3	0	2	1	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0037	3	0	1	1	0	1	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0038	3	1	0	2	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0039	3	0	0	2	0	1	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0040	3	0	0	3	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0041	3	0	0	3	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0042	3	0	0	3	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0043	3	0	0	3	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0044	3	0	1	1	0	1	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0045	2	2	0	0	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0046	2	2	0	0	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0047	2	0	0	1	0	1	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0048	2	0	1	1	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0049	2	0	0	2	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0050	2	0	0	1	0	1	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0051	2	0	0	2	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0052	2	0	2	0	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0053	2	0	0	1	0	1	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0054	2	0	0	2	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0055	2	0	2	0	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0056	2	0	0	2	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0057	2	0	0	2	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0058	2	0	2	0	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0059	2	0	0	2	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0060	2	2	0	0	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0061	2	2	0	0	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0062	2	2	0	0	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0063	2	2	0	0	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0064	2	2	0	0	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0065	2	0	0	0	2	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0066	2	0	0	2	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0067	2	0	1	0	0	1	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0068	1	1	0	0	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0069	1	1	0	0	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0070	1	1	0	0	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0071	1	1	0	0	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0072	1	0	0	0	0	1	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0073	1	1	0	0	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0074	1	1	0	0	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0075	1	1	0	0	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0076	1	1	0	0	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0077	1	0	0	0	1	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0078	1	0	1	0	0	0	CCNA1	chr13	36427495	36447870