JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCNA1_chr13_36427495_36447870	0/0	g0179	1	1	0	0	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0180	1	1	0	0	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0181	1	1	0	0	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0182	1	0	0	1	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0183	1	0	1	0	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0184	1	0	0	1	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0185	1	0	1	0	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0186	1	0	0	0	0	1	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0187	1	0	0	1	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0188	1	0	1	0	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0189	1	0	0	0	1	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0190	1	1	0	0	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0191	1	0	1	0	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0192	1	0	0	0	1	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0193	1	0	1	0	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0194	1	1	0	0	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0195	1	1	0	0	0	0	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	g0196	1	0	0	0	0	1	CCNA1	chr13	36427495	36447870
CCNA2_chr4_121811444_121828883	0/0	g0001	92	10	22	45	3	12	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0002	89	2	16	56	4	11	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0003	38	7	0	30	0	1	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/1	g0004	35	7	10	7	4	6	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0005	19	0	7	12	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	1/0	g0006	14	0	0	10	1	2	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0007	13	11	0	0	0	2	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0008	10	10	0	0	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0009	8	7	1	0	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0010	8	0	0	8	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0011	7	3	4	0	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0012	5	2	2	1	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0013	5	0	4	0	0	1	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0014	4	4	0	0	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0015	4	3	1	0	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0016	3	3	0	0	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0017	3	0	2	0	1	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0018	3	0	0	3	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0019	3	0	0	0	0	3	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0020	2	2	0	0	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0021	2	2	0	0	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0022	2	1	0	1	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0023	2	2	0	0	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0024	2	0	0	0	2	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0025	2	0	2	0	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0026	2	0	0	2	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0027	2	0	0	2	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0028	2	0	0	0	1	1	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0029	2	0	1	0	1	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0030	2	0	1	0	0	1	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0031	1	0	0	0	0	1	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0032	1	0	0	0	0	1	CCNA2	chr4	121811444	121828883