JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCNA2_chr4_121811444_121828883	0/0	g0033	1	1	0	0	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0034	1	0	1	0	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0035	1	1	0	0	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0036	1	1	0	0	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0037	1	1	0	0	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0038	1	1	0	0	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0039	1	1	0	0	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0040	1	1	0	0	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0041	1	0	0	1	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0042	1	1	0	0	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0043	1	0	0	1	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0044	1	0	0	0	0	1	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0045	1	0	0	1	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0046	1	0	0	1	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0047	1	0	0	0	1	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0048	1	0	0	0	0	1	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0049	1	1	0	0	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0050	1	0	1	0	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0051	1	0	1	0	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0052	1	1	0	0	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0053	1	0	0	1	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0054	1	0	0	1	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0055	1	1	0	0	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0056	1	0	1	0	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0057	1	0	0	1	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0058	1	0	1	0	0	0	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	g0059	1	1	0	0	0	0	CCNA2	chr4	121811444	121828883
CCNB1IP1_chr14_20306370_20338279	0/0	g0001	36	0	10	24	0	2	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0002	10	0	0	9	1	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0003	10	0	1	9	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0004	6	0	2	3	1	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0005	5	3	1	1	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0006	4	0	0	4	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0007	4	1	2	1	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0008	4	0	1	3	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0009	3	2	1	0	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0010	3	0	1	1	1	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0011	3	0	1	1	0	1	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0012	3	3	0	0	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0013	3	0	0	3	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0014	3	0	1	0	0	2	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0015	3	0	1	0	0	2	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0016	3	0	0	3	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0017	3	3	0	0	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0018	3	3	0	0	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0019	2	0	0	2	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0020	2	0	1	1	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0021	2	0	0	2	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0022	2	0	2	0	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0023	2	0	0	2	0	0	CCNB1IP1	chr14	20306370	20338279