JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCNB1IP1_chr14_20306370_20338279	0/0	g0274	1	0	1	0	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0275	1	0	0	0	0	1	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0276	1	0	0	0	0	1	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0277	1	0	0	1	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0278	1	0	1	0	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0279	1	0	1	0	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0280	1	1	0	0	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0281	1	0	1	0	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0282	1	1	0	0	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0283	1	1	0	0	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0284	1	1	0	0	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0285	1	0	0	1	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0286	1	0	0	1	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0287	1	1	0	0	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0288	1	1	0	0	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0289	1	1	0	0	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0290	1	1	0	0	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0291	1	1	0	0	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0292	1	0	1	0	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0293	1	1	0	0	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0294	1	1	0	0	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0295	1	1	0	0	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0296	1	1	0	0	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0297	1	0	0	1	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0298	1	0	0	1	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	g0299	1	1	0	0	0	0	CCNB1IP1	chr14	20306370	20338279
CCNB1_chr5_69162150_69183245	0/0	g0001	40	1	9	24	2	4	CCNB1	chr5	69162150	69183245
CCNB1_chr5_69162150_69183245	0/0	g0002	26	1	7	13	2	3	CCNB1	chr5	69162150	69183245
CCNB1_chr5_69162150_69183245	1/0	g0003	21	3	3	11	0	3	CCNB1	chr5	69162150	69183245
CCNB1_chr5_69162150_69183245	0/0	g0004	20	0	6	10	1	3	CCNB1	chr5	69162150	69183245
CCNB1_chr5_69162150_69183245	0/0	g0005	17	6	4	5	1	1	CCNB1	chr5	69162150	69183245
CCNB1_chr5_69162150_69183245	0/0	g0006	13	0	0	13	0	0	CCNB1	chr5	69162150	69183245
CCNB1_chr5_69162150_69183245	0/0	g0007	11	1	3	7	0	0	CCNB1	chr5	69162150	69183245
CCNB1_chr5_69162150_69183245	0/0	g0008	9	8	1	0	0	0	CCNB1	chr5	69162150	69183245
CCNB1_chr5_69162150_69183245	0/0	g0009	8	3	0	2	0	3	CCNB1	chr5	69162150	69183245
CCNB1_chr5_69162150_69183245	0/0	g0010	8	3	2	3	0	0	CCNB1	chr5	69162150	69183245
CCNB1_chr5_69162150_69183245	0/0	g0011	7	0	0	7	0	0	CCNB1	chr5	69162150	69183245
CCNB1_chr5_69162150_69183245	0/0	g0012	6	6	0	0	0	0	CCNB1	chr5	69162150	69183245
CCNB1_chr5_69162150_69183245	0/0	g0013	6	0	1	4	0	1	CCNB1	chr5	69162150	69183245
CCNB1_chr5_69162150_69183245	0/0	g0014	6	0	2	3	0	1	CCNB1	chr5	69162150	69183245
CCNB1_chr5_69162150_69183245	0/0	g0015	5	0	0	5	0	0	CCNB1	chr5	69162150	69183245
CCNB1_chr5_69162150_69183245	0/0	g0016	5	0	0	5	0	0	CCNB1	chr5	69162150	69183245
CCNB1_chr5_69162150_69183245	0/0	g0017	5	5	0	0	0	0	CCNB1	chr5	69162150	69183245
CCNB1_chr5_69162150_69183245	0/0	g0018	4	0	0	0	0	4	CCNB1	chr5	69162150	69183245
CCNB1_chr5_69162150_69183245	0/0	g0019	4	0	1	1	0	2	CCNB1	chr5	69162150	69183245
CCNB1_chr5_69162150_69183245	0/0	g0020	4	0	2	0	0	2	CCNB1	chr5	69162150	69183245
CCNB1_chr5_69162150_69183245	0/0	g0021	4	0	1	2	0	1	CCNB1	chr5	69162150	69183245
CCNB1_chr5_69162150_69183245	0/0	g0022	4	0	1	3	0	0	CCNB1	chr5	69162150	69183245
CCNB1_chr5_69162150_69183245	0/0	g0023	4	0	0	3	0	1	CCNB1	chr5	69162150	69183245
CCNB1_chr5_69162150_69183245	0/0	g0024	4	0	1	3	0	0	CCNB1	chr5	69162150	69183245