Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
A1BG_chr19_58340183_58358492	0/1	t0001	1895	262	29	57	125	13	37	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	1/0	t0002	1895	63	20	11	26	3	2	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	t0003	1896	18	14	3	0	0	1	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	t0004	1895	8	7	1	0	0	0	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	t0005	1895	7	7	0	0	0	0	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	t0006	1895	5	4	1	0	0	0	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	t0007	1896	5	5	0	0	0	0	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	t0008	1894	4	4	0	0	0	0	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	t0009	1895	2	0	0	2	0	0	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	t0010	1895	1	0	0	0	0	1	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	t0011	1895	1	0	1	0	0	0	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	t0012	1895	1	1	0	0	0	0	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	t0013	1895	1	1	0	0	0	0	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	t0014	1895	1	0	0	1	0	0	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	t0015	1895	1	0	0	0	0	1	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	t0016	1895	1	0	0	1	0	0	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	t0017	1895	1	0	1	0	0	0	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	t0018	1895	1	1	0	0	0	0	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	t0019	1895	1	0	0	1	0	0	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	t0020	1896	1	0	1	0	0	0	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	t0021	1895	1	1	0	0	0	0	copy fasta	A1BG	chr19	58340183	58358492
A1CF_chr10_50794409_50890627	0/1	t0001	7455	100	19	21	46	7	6	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0002	7462	54	0	2	43	0	9	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0003	7462	45	1	12	23	3	6	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0004	7461	35	12	1	19	0	3	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0005	7461	32	13	7	2	0	10	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0006	7462	8	7	1	0	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0007	7454	5	1	0	4	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0008	7461	4	4	0	0	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0009	7461	4	4	0	0	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0010	7461	3	2	1	0	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0011	7462	2	2	0	0	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0012	7461	2	2	0	0	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0013	7462	2	0	0	0	0	2	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0014	7462	2	2	0	0	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0015	7461	2	2	0	0	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0016	7461	2	2	0	0	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0017	7462	2	2	0	0	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0018	7462	2	2	0	0	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0019	7460	2	1	1	0	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0020	7455	1	0	0	1	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0021	7455	1	0	1	0	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0022	7455	1	0	0	0	1	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0023	7455	1	0	1	0	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0024	7456	1	1	0	0	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0025	7456	1	0	0	1	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0026	7455	1	0	0	0	0	1	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0027	7455	1	0	0	0	0	1	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0028	7461	1	0	1	0	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0029	7463	1	0	0	0	0	1	copy fasta	A1CF	chr10	50794409	50890627