Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AAK1_chr2_69452997_69648739	0/0	t0154	18273	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0155	18273	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAMDC_chr11_77816144_77877352	1/1	t0001	154	305	64	47	161	12	19	copy fasta	AAMDC	chr11	77816144	77877352
AAMDC_chr11_77816144_77877352	0/0	t0002	154	77	22	15	21	4	15	copy fasta	AAMDC	chr11	77816144	77877352
AAMP_chr2_218259129_218275137	0/1	t0001	456	380	77	80	168	16	38	copy fasta	AAMP	chr2	218259129	218275137
AAMP_chr2_218259129_218275137	1/0	t0002	456	18	17	0	0	0	0	copy fasta	AAMP	chr2	218259129	218275137
AAMP_chr2_218259129_218275137	0/0	t0003	456	2	0	0	2	0	0	copy fasta	AAMP	chr2	218259129	218275137
AANAT_chr17_76462603_76475117	1/0	t0001	348	418	88	78	191	16	44	copy fasta	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	t0002	348	4	4	0	0	0	0	copy fasta	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	t0003	348	2	0	0	0	0	2	copy fasta	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	t0004	360	1	0	0	1	0	0	copy fasta	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/1	t0005	348	1	0	0	0	0	0	copy fasta	AANAT	chr17	76462603	76475117
AAR2_chr20_36231478_36261933	1/1	t0001	1263	243	46	51	109	10	25	copy fasta	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	t0002	1263	29	25	4	0	0	0	copy fasta	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	t0003	1263	9	0	3	6	0	0	copy fasta	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	t0004	1263	5	5	0	0	0	0	copy fasta	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	t0005	1263	3	3	0	0	0	0	copy fasta	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	t0006	1263	2	2	0	0	0	0	copy fasta	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	t0007	1263	2	1	1	0	0	0	copy fasta	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	t0008	1263	1	0	0	1	0	0	copy fasta	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	t0009	1263	1	0	0	0	0	1	copy fasta	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	t0010	1263	1	0	1	0	0	0	copy fasta	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	t0011	1263	1	0	1	0	0	0	copy fasta	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	t0012	1263	1	0	1	0	0	0	copy fasta	AAR2	chr20	36231478	36261933
AARD_chr8_116933207_116949487	1/1	t0001	1824	249	46	49	118	8	26	copy fasta	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	t0002	1824	91	4	14	51	3	19	copy fasta	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	t0003	1823	20	5	2	12	1	0	copy fasta	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	t0004	1824	19	15	2	1	1	0	copy fasta	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	t0005	1825	14	1	7	5	1	0	copy fasta	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	t0006	1825	13	1	2	8	0	2	copy fasta	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	t0007	1824	8	8	0	0	0	0	copy fasta	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	t0008	1824	7	0	0	7	0	0	copy fasta	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	t0009	1824	6	6	0	0	0	0	copy fasta	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	t0010	1823	4	4	0	0	0	0	copy fasta	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	t0011	1823	3	0	0	3	0	0	copy fasta	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	t0012	1825	2	2	0	0	0	0	copy fasta	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	t0013	1823	1	0	0	1	0	0	copy fasta	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	t0014	1824	1	1	0	0	0	0	copy fasta	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	t0015	1824	1	1	0	0	0	0	copy fasta	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	t0016	1824	1	0	0	0	0	1	copy fasta	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	t0017	1824	1	0	0	1	0	0	copy fasta	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	t0018	1824	1	0	0	1	0	0	copy fasta	AARD	chr8	116933207	116949487
AARS1_chr16_70247298_70294506	1/1	t0001	531	340	71	68	147	13	39	copy fasta	AARS1	chr16	70247298	70294506
AARS1_chr16_70247298_70294506	0/0	t0002	531	13	5	5	0	1	2	copy fasta	AARS1	chr16	70247298	70294506
AARS1_chr16_70247298_70294506	0/0	t0003	531	3	3	0	0	0	0	copy fasta	AARS1	chr16	70247298	70294506
AARS1_chr16_70247298_70294506	0/0	t0004	531	2	2	0	0	0	0	copy fasta	AARS1	chr16	70247298	70294506
AARS1_chr16_70247298_70294506	0/0	t0005	531	1	0	1	0	0	0	copy fasta	AARS1	chr16	70247298	70294506
AARS1_chr16_70247298_70294506	0/0	t0006	531	1	1	0	0	0	0	copy fasta	AARS1	chr16	70247298	70294506
AARS1_chr16_70247298_70294506	0/0	t0007	531	1	0	0	1	0	0	copy fasta	AARS1	chr16	70247298	70294506
AARS1_chr16_70247298_70294506	0/0	t0008	531	1	0	0	0	0	1	copy fasta	AARS1	chr16	70247298	70294506