JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CABP5_chr19_48024383_48049079	0/0	t0066	1342	1	1	0	0	0	0	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	t0067	1355	1	0	0	0	0	1	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	t0068	1351	1	0	0	0	0	1	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	t0069	1349	1	0	1	0	0	0	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	t0070	1356	1	0	1	0	0	0	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	t0071	1352	1	0	1	0	0	0	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	t0072	1342	1	0	0	1	0	0	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	t0073	1324	1	0	1	0	0	0	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	t0074	1348	1	1	0	0	0	0	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	t0075	1344	1	1	0	0	0	0	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	t0076	1342	1	1	0	0	0	0	copy fasta	CABP5	chr19	48024383	48049079
CABP7_chr22_29715003_29736833	0/0	t0001	2687	196	52	29	89	12	14	copy fasta	CABP7	chr22	29715003	29736833
CABP7_chr22_29715003_29736833	1/1	t0002	2687	121	15	31	44	5	24	copy fasta	CABP7	chr22	29715003	29736833
CABP7_chr22_29715003_29736833	0/0	t0003	2687	41	0	0	37	0	4	copy fasta	CABP7	chr22	29715003	29736833
CABP7_chr22_29715003_29736833	0/0	t0004	2687	21	5	10	4	0	2	copy fasta	CABP7	chr22	29715003	29736833
CABP7_chr22_29715003_29736833	0/0	t0005	2687	20	0	0	20	0	0	copy fasta	CABP7	chr22	29715003	29736833
CABP7_chr22_29715003_29736833	0/0	t0006	2687	6	5	1	0	0	0	copy fasta	CABP7	chr22	29715003	29736833
CABP7_chr22_29715003_29736833	0/0	t0007	2687	5	4	1	0	0	0	copy fasta	CABP7	chr22	29715003	29736833
CABP7_chr22_29715003_29736833	0/0	t0008	2687	4	3	1	0	0	0	copy fasta	CABP7	chr22	29715003	29736833
CABP7_chr22_29715003_29736833	0/0	t0009	2687	4	4	0	0	0	0	copy fasta	CABP7	chr22	29715003	29736833
CABP7_chr22_29715003_29736833	0/0	t0010	2687	3	3	0	0	0	0	copy fasta	CABP7	chr22	29715003	29736833
CABP7_chr22_29715003_29736833	0/0	t0011	2687	2	2	0	0	0	0	copy fasta	CABP7	chr22	29715003	29736833
CABP7_chr22_29715003_29736833	0/0	t0012	2687	1	1	0	0	0	0	copy fasta	CABP7	chr22	29715003	29736833
CABP7_chr22_29715003_29736833	0/0	t0013	2687	1	0	0	1	0	0	copy fasta	CABP7	chr22	29715003	29736833
CABP7_chr22_29715003_29736833	0/0	t0014	2687	1	0	0	1	0	0	copy fasta	CABP7	chr22	29715003	29736833
CABP7_chr22_29715003_29736833	0/0	t0015	2687	1	0	0	0	1	0	copy fasta	CABP7	chr22	29715003	29736833
CABP7_chr22_29715003_29736833	0/0	t0016	2687	1	0	0	1	0	0	copy fasta	CABP7	chr22	29715003	29736833
CABP7_chr22_29715003_29736833	0/0	t0017	2687	1	1	0	0	0	0	copy fasta	CABP7	chr22	29715003	29736833
CABP7_chr22_29715003_29736833	0/0	t0018	2687	1	0	0	1	0	0	copy fasta	CABP7	chr22	29715003	29736833
CABP7_chr22_29715003_29736833	0/0	t0019	2687	1	1	0	0	0	0	copy fasta	CABP7	chr22	29715003	29736833
CABP7_chr22_29715003_29736833	0/0	t0020	2687	1	0	1	0	0	0	copy fasta	CABP7	chr22	29715003	29736833
CABP7_chr22_29715003_29736833	0/0	t0021	2687	1	0	0	0	0	1	copy fasta	CABP7	chr22	29715003	29736833
CABP7_chr22_29715003_29736833	0/0	t0022	2687	1	0	1	0	0	0	copy fasta	CABP7	chr22	29715003	29736833
CABP7_chr22_29715003_29736833	0/0	t0023	2687	1	0	1	0	0	0	copy fasta	CABP7	chr22	29715003	29736833
CABP7_chr22_29715003_29736833	0/0	t0024	2687	1	1	0	0	0	0	copy fasta	CABP7	chr22	29715003	29736833
CABP7_chr22_29715003_29736833	0/0	t0025	2687	1	1	0	0	0	0	copy fasta	CABP7	chr22	29715003	29736833
CABP7_chr22_29715003_29736833	0/0	t0026	2687	1	0	0	0	0	1	copy fasta	CABP7	chr22	29715003	29736833
CABS1_chr4_70329981_70342116	1/1	t0001	330	445	96	77	208	18	44	copy fasta	CABS1	chr4	70329981	70342116
CABS1_chr4_70329981_70342116	0/0	t0002	330	1	0	1	0	0	0	copy fasta	CABS1	chr4	70329981	70342116
CABYR_chr18_24134062_24166600	1/1	t0001	166	402	92	66	186	16	40	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	t0002	166	6	6	0	0	0	0	copy fasta	CABYR	chr18	24134062	24166600
CACFD1_chr9_133454978_133475848	0/0	t0001	2258	67	5	5	47	5	5	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0002	2275	66	0	27	22	0	17	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0003	2277	50	8	10	29	0	3	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0004	2279	35	8	3	20	1	3	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0005	2281	29	5	4	14	2	4	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	1/0	t0006	2285	22	12	3	4	1	1	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0007	2275	21	11	6	1	2	1	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0008	2258	13	2	3	8	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0009	2277	12	0	1	11	0	0	copy fasta	CACFD1	chr9	133454978	133475848