JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CACFD1_chr9_133454978_133475848	0/0	t0010	2275	7	5	1	1	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0011	2260	6	0	2	4	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0012	2273	5	4	0	0	0	1	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0013	2293	5	0	0	5	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0014	2275	4	1	1	0	0	2	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0015	2281	4	0	1	2	0	1	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0016	2283	4	0	0	1	0	3	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0017	2283	4	4	0	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0018	2273	3	3	0	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0019	2273	3	0	3	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0020	2275	3	1	1	0	1	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0021	2260	3	2	0	1	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0022	2273	3	3	0	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0023	2275	2	0	2	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0024	2275	2	0	0	0	2	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0025	2281	2	0	0	0	0	2	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0026	2287	2	2	0	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0027	2287	2	2	0	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0028	2285	2	2	0	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0029	2273	1	0	0	1	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0030	2275	1	0	1	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0031	2281	1	0	0	0	1	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0032	2275	1	0	0	1	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0033	2279	1	0	0	1	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0034	2281	1	0	1	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0035	2275	1	0	0	0	0	1	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0036	2277	1	1	0	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0037	2267	1	1	0	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0038	2279	1	1	0	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0039	2279	1	1	0	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0040	2285	1	0	1	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0041	2275	1	1	0	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0042	2279	1	1	0	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0043	2277	1	0	0	1	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0044	2277	1	1	0	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0045	2279	1	1	0	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0046	2277	1	0	1	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0047	2248	1	1	0	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0048	2254	1	0	1	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0049	2256	1	0	0	1	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0050	2262	1	0	0	1	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0051	2271	1	0	1	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0052	2277	1	1	0	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0053	2285	1	1	0	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0054	2287	1	0	1	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0055	2279	1	1	0	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0056	2258	1	0	0	0	0	1	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0057	2266	1	1	0	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0058	2273	1	1	0	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0059	2279	1	0	0	0	1	0	copy fasta	CACFD1	chr9	133454978	133475848