JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CACFD1_chr9_133454978_133475848	0/0	t0060	2281	1	0	0	0	0	1	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0061	2281	1	0	0	1	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0062	2283	1	0	0	1	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0063	2258	1	0	0	1	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0064	2277	1	1	0	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0065	2285	1	0	0	1	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/1	t0066	2248	1	0	0	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	t0067	2277	1	1	0	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACHD1_chr1_64465129_64698053	0/1	t0001	2109	77	26	24	14	4	8	copy fasta	CACHD1	chr1	64465129	64698053
CACHD1_chr1_64465129_64698053	0/0	t0002	2109	29	16	7	5	0	1	copy fasta	CACHD1	chr1	64465129	64698053
CACHD1_chr1_64465129_64698053	0/0	t0003	2109	12	4	3	0	3	2	copy fasta	CACHD1	chr1	64465129	64698053
CACHD1_chr1_64465129_64698053	0/0	t0004	2109	9	5	3	1	0	0	copy fasta	CACHD1	chr1	64465129	64698053
CACHD1_chr1_64465129_64698053	0/0	t0005	2109	8	8	0	0	0	0	copy fasta	CACHD1	chr1	64465129	64698053
CACHD1_chr1_64465129_64698053	0/0	t0006	2109	7	0	1	6	0	0	copy fasta	CACHD1	chr1	64465129	64698053
CACHD1_chr1_64465129_64698053	0/0	t0007	2109	4	3	0	0	0	1	copy fasta	CACHD1	chr1	64465129	64698053
CACHD1_chr1_64465129_64698053	0/0	t0008	2109	3	2	1	0	0	0	copy fasta	CACHD1	chr1	64465129	64698053
CACHD1_chr1_64465129_64698053	1/0	t0009	2109	3	0	1	0	1	0	copy fasta	CACHD1	chr1	64465129	64698053
CACHD1_chr1_64465129_64698053	0/0	t0010	2108	2	2	0	0	0	0	copy fasta	CACHD1	chr1	64465129	64698053
CACHD1_chr1_64465129_64698053	0/0	t0011	2109	2	2	0	0	0	0	copy fasta	CACHD1	chr1	64465129	64698053
CACHD1_chr1_64465129_64698053	0/0	t0012	2109	2	2	0	0	0	0	copy fasta	CACHD1	chr1	64465129	64698053
CACHD1_chr1_64465129_64698053	0/0	t0013	2108	2	2	0	0	0	0	copy fasta	CACHD1	chr1	64465129	64698053
CACHD1_chr1_64465129_64698053	0/0	t0014	2108	1	1	0	0	0	0	copy fasta	CACHD1	chr1	64465129	64698053
CACHD1_chr1_64465129_64698053	0/0	t0015	2109	1	1	0	0	0	0	copy fasta	CACHD1	chr1	64465129	64698053
CACHD1_chr1_64465129_64698053	0/0	t0016	2109	1	1	0	0	0	0	copy fasta	CACHD1	chr1	64465129	64698053
CACHD1_chr1_64465129_64698053	0/0	t0017	2109	1	1	0	0	0	0	copy fasta	CACHD1	chr1	64465129	64698053
CACHD1_chr1_64465129_64698053	0/0	t0018	2109	1	1	0	0	0	0	copy fasta	CACHD1	chr1	64465129	64698053
CACHD1_chr1_64465129_64698053	0/0	t0019	2109	1	1	0	0	0	0	copy fasta	CACHD1	chr1	64465129	64698053
CACNA1A_chr19_13201442_13511479	0/0	t0001	1117	42	8	14	10	2	8	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	1/0	t0002	1127	33	0	12	12	1	7	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0003	1126	25	2	8	13	1	1	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0004	1118	18	8	7	0	1	2	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0005	1121	10	6	0	4	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0006	1128	8	2	1	1	0	4	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0007	1125	8	4	1	2	1	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0008	1122	6	3	2	0	0	1	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0009	1120	6	3	0	3	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0010	1119	6	4	1	0	1	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0011	1116	4	0	1	2	0	1	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0012	1121	4	4	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0013	1115	4	4	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0014	1124	4	3	0	0	0	1	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0015	1124	3	1	0	1	0	1	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0016	1122	3	3	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0017	1127	2	0	0	2	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0018	1124	2	1	1	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0019	1120	2	2	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0020	1127	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0021	1125	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0022	1124	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0023	1123	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479