JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CACNA1A_chr19_13201442_13511479	0/0	t0024	1126	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0025	1121	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0026	1123	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0027	1123	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0028	1126	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0029	1122	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0030	1123	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0031	1117	1	0	0	0	0	1	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0032	1117	1	0	1	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/1	t0033	1128	1	0	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0034	1126	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0035	1123	1	0	0	0	1	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0036	1117	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0037	1116	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0038	1118	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0039	1114	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0040	1126	1	0	1	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0041	1119	1	0	0	0	0	1	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0042	1113	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0043	1125	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0044	1127	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0045	1123	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0046	1124	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	t0047	1118	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1B_chr9_137872782_138129619	0/0	t0001	2771	52	3	11	26	2	10	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/1	t0002	2771	44	3	8	24	3	5	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0003	2771	27	0	1	23	1	2	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0004	2768	19	0	1	18	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0005	2764	12	12	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	1/0	t0006	2773	11	10	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0007	2767	10	9	1	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0008	2771	10	6	1	1	0	2	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0009	2771	6	1	0	0	0	5	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0010	2769	6	6	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0011	2764	3	2	0	0	1	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0012	2764	3	3	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0013	2773	3	3	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0014	2764	3	0	0	0	0	3	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0015	2771	2	0	0	2	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0016	2769	2	2	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0017	2774	2	0	0	2	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0018	2770	2	0	0	1	1	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0019	2771	2	2	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0020	2773	2	0	0	2	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0021	2773	2	1	0	0	0	1	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0022	2773	2	2	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0023	2771	1	1	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0024	2770	1	1	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0025	2773	1	0	0	1	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0026	2736	1	0	0	1	0	0	copy fasta	CACNA1B	chr9	137872782	138129619