JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CACNA1B_chr9_137872782_138129619	0/0	t0027	2773	1	0	0	0	0	1	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0028	2763	1	1	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0029	2771	1	0	0	1	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0030	2771	1	0	0	1	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0031	2771	1	0	1	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0032	2775	1	1	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0033	2771	1	1	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0034	2768	1	1	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0035	2771	1	0	0	1	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0036	2773	1	0	1	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0037	2770	1	0	1	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0038	2770	1	0	1	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0039	2771	1	0	0	0	0	1	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0040	2771	1	1	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0041	2771	1	1	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0042	2768	1	1	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0043	2770	1	1	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0044	2773	1	1	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	t0045	2764	1	0	1	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1C_chr12_2047987_2702950	0/0	t0001	7342	16	5	2	2	0	7	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0002	7343	9	2	1	4	1	1	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0003	7342	8	3	1	2	1	1	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0004	7343	6	6	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0005	7341	5	4	1	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0006	7341	4	3	1	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0007	7340	4	4	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0008	7340	3	0	2	0	0	1	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0009	7342	3	3	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0010	7340	3	0	1	0	0	2	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0011	7342	3	2	1	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0012	7338	2	2	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0013	7328	2	2	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0014	7340	2	2	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0015	7343	2	2	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0016	7338	2	2	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0017	7343	2	2	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0018	7341	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0019	7340	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0020	7340	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0021	7341	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0022	7342	1	0	0	1	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0023	7343	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0024	7344	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0025	7343	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0026	7344	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0027	7340	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0028	7340	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0029	7342	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0030	7341	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0031	7340	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950