JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CACNA1C_chr12_2047987_2702950	0/0	t0032	7342	1	0	1	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0033	7341	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0034	7340	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0035	7340	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0036	7342	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0037	7330	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0038	7342	1	0	1	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0039	7341	1	0	0	1	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0040	7338	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0041	7342	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0042	7343	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0043	7343	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0044	7340	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	t0045	7330	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1D_chr3_53489611_53818733	0/1	t0001	2880	28	2	8	12	3	2	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0002	2880	23	1	3	10	2	7	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0003	2885	13	2	3	0	4	4	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0004	2885	10	1	5	0	2	2	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0005	2881	8	0	0	7	1	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0006	2882	5	5	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0007	2877	5	2	0	1	0	2	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0008	2877	4	0	2	1	0	1	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0009	2877	4	1	2	1	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0010	2881	4	4	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0011	2877	3	0	1	2	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0012	2888	3	0	0	3	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0013	2882	3	3	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0014	2880	3	1	0	1	0	1	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0015	2881	2	2	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0016	2884	2	2	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0017	2883	2	2	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0018	2876	2	2	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0019	2877	2	2	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0020	2888	2	0	2	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0021	2885	2	0	0	2	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0022	2884	2	0	2	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0023	2879	2	1	0	1	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0024	2881	2	0	0	2	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0025	2881	2	0	0	1	1	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0026	2884	2	2	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0027	2881	2	2	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0028	2882	2	2	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0029	2883	2	2	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0030	2876	2	2	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0031	2877	2	2	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0032	2885	2	2	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0033	2881	2	0	0	2	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0034	2876	2	2	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0035	2881	2	2	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0036	2876	2	2	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733