JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CACNA1D_chr3_53489611_53818733	0/0	t0037	2885	2	1	1	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0038	2880	2	0	2	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0039	2881	2	1	1	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0040	2884	1	0	1	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0041	2877	1	0	1	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0042	2878	1	0	0	0	0	1	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0043	2889	1	0	0	1	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0044	2884	1	1	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0045	2884	1	0	0	0	0	1	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0046	2883	1	1	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0047	2873	1	0	0	1	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0048	2880	1	0	0	1	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0049	2881	1	0	0	1	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0050	2880	1	0	0	0	0	1	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0051	2882	1	1	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0052	2880	1	0	0	0	1	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0053	2884	1	1	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0054	2882	1	1	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0055	2880	1	1	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0056	2884	1	1	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0057	2879	1	0	0	1	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0058	2880	1	0	1	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0059	2877	1	1	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0060	2878	1	1	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0061	2880	1	0	0	1	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0062	2881	1	0	1	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0063	2883	1	1	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0064	2882	1	1	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0065	2883	1	0	1	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0066	2877	1	1	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0067	2884	1	1	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0068	2884	1	1	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0069	2883	1	1	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0070	2881	1	1	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0071	2884	1	1	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0072	2884	1	1	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0073	2879	1	1	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0074	2880	1	1	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0075	2881	1	0	0	0	0	1	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0076	2882	1	1	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0077	2876	1	1	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0078	2881	1	0	0	0	0	1	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0079	2883	1	1	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0080	2881	1	1	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	1/0	t0081	2884	1	0	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0082	2881	1	0	1	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	t0083	2881	1	1	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1E_chr1_181478517_181813084	0/0	t0001	9481	20	2	10	1	1	6	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	t0002	9482	18	6	6	2	3	1	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	t0003	9482	15	0	2	7	1	5	copy fasta	CACNA1E	chr1	181478517	181813084