JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CACNA1E_chr1_181478517_181813084	0/0	t0054	9482	1	0	0	1	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	t0055	9481	1	0	1	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	t0056	9482	1	0	0	0	0	1	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	t0057	9481	1	0	0	0	0	1	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	t0058	9482	1	0	0	0	0	1	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	t0059	9482	1	0	0	0	0	1	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	t0060	9480	1	0	0	0	0	1	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	t0061	9481	1	1	0	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	t0062	9481	1	0	1	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	t0063	9483	1	1	0	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	t0064	9481	1	1	0	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	t0065	9481	1	1	0	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	t0066	9481	1	1	0	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	t0067	9482	1	1	0	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	t0068	9481	1	1	0	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	t0069	9482	1	1	0	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	t0070	9498	1	1	0	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	t0071	9479	1	1	0	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	t0072	9496	1	1	0	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	t0073	9496	1	1	0	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	t0074	9492	1	1	0	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	t0075	9479	1	1	0	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	t0076	9480	1	0	0	1	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	t0077	9479	1	0	0	1	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	t0078	9483	1	1	0	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	t0079	9483	1	0	1	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1F_chrX_49200063_49238340	1/1	t0001	106	290	72	52	119	11	34	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1G_chr17_50555715_50632474	1/1	t0001	1469	166	55	39	36	10	24	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	t0002	1469	27	25	2	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	t0003	1469	22	0	5	5	4	8	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	t0004	1469	19	9	4	4	2	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	t0005	1469	6	0	3	0	0	3	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	t0006	1469	1	1	0	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	t0007	1469	1	1	0	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	t0008	1469	1	0	0	0	0	1	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	t0009	1469	1	0	0	1	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	t0010	1469	1	1	0	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	t0011	1469	1	0	1	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1H_chr16_1148106_1226768	0/0	t0001	1158	131	36	30	45	9	11	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0002	1158	51	11	4	31	0	5	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	1/0	t0003	1158	27	12	8	3	1	2	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0004	1158	24	7	2	12	0	3	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0005	1124	16	2	4	6	1	3	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0006	1158	11	1	1	2	0	7	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/1	t0007	1158	10	1	1	5	0	2	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0008	1124	9	0	6	1	0	2	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0009	1158	7	0	6	1	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0010	1158	5	0	3	2	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0011	1158	3	1	0	2	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0012	1158	3	0	1	1	0	1	copy fasta	CACNA1H	chr16	1148106	1226768