JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CACNA1H_chr16_1148106_1226768	0/0	t0013	1124	3	0	0	0	1	2	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0014	1158	2	0	0	2	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0015	1158	2	0	1	1	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0016	1164	2	2	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0017	1124	2	0	1	1	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0018	1164	2	2	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0019	1158	2	2	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0020	1158	2	2	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0021	1124	2	2	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0022	1158	1	0	0	1	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0023	1158	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0024	1158	1	0	0	1	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0025	1158	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0026	1158	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0027	1158	1	0	0	0	1	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0028	1158	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0029	1158	1	0	0	1	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0030	1124	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0031	1124	1	0	1	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0032	1124	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0033	1164	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0034	1158	1	0	0	1	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0035	1158	1	0	0	1	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0036	1158	1	0	1	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0037	1158	1	0	0	0	0	1	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0038	1158	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0039	1158	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0040	1158	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0041	1158	1	0	0	0	1	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0042	1158	1	0	0	0	0	1	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	t0043	1144	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1I_chr22_39565753_39694735	1/0	t0001	3331	37	16	9	1	5	5	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0002	3335	29	2	9	14	2	2	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0003	3333	24	3	4	9	2	6	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0004	3331	21	6	7	7	0	1	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0005	3325	19	16	3	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0006	3325	12	10	2	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0007	3337	11	2	3	5	0	1	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0008	3325	6	5	1	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0009	3329	5	0	1	0	2	2	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0010	3323	4	4	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0011	3335	3	1	0	0	1	1	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0012	3333	3	2	0	0	0	1	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0013	3331	3	0	0	0	0	3	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0014	3335	3	0	3	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0015	3329	3	3	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0016	3341	2	0	0	2	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0017	3339	2	0	1	0	0	1	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0018	3337	2	0	1	0	1	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0019	3337	2	0	0	0	2	0	copy fasta	CACNA1I	chr22	39565753	39694735