JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CACNA1I_chr22_39565753_39694735	0/0	t0020	3325	2	2	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0021	3323	2	0	0	0	0	2	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0022	3323	2	2	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0023	3347	2	0	2	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0024	3361	1	0	0	0	0	1	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0025	3385	1	0	0	0	0	1	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/1	t0026	3357	1	0	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0027	3333	1	0	1	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0028	3331	1	1	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0029	3331	1	1	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0030	3331	1	1	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0031	3325	1	1	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0032	3325	1	1	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0033	3339	1	0	1	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0034	3359	1	0	0	0	0	1	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0035	3349	1	1	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0036	3347	1	1	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0037	3341	1	0	0	0	0	1	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0038	3337	1	0	1	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0039	3339	1	1	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0040	3373	1	1	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0041	3337	1	0	0	0	1	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0042	3337	1	0	1	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0043	3337	1	0	1	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0044	3337	1	0	1	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0045	3335	1	0	0	1	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0046	3333	1	0	0	1	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0047	3363	1	0	0	1	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0048	3333	1	0	0	0	0	1	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0049	3329	1	0	1	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0050	3361	1	0	0	1	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0051	3342	1	1	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0052	3327	1	1	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0053	3325	1	1	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0054	3325	1	1	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0055	3325	1	1	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0056	3342	1	0	1	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0057	3319	1	1	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0058	3357	1	0	1	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0059	3349	1	0	1	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	t0060	3325	1	1	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1S_chr1_201034512_201117426	1/1	t0001	407	303	83	68	104	14	32	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	t0002	407	10	4	0	4	0	2	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	t0003	407	1	1	0	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA2D1_chr7_81941444_82448777	0/1	t0001	4267	34	16	9	4	0	4	copy fasta	CACNA2D1	chr7	81941444	82448777
CACNA2D1_chr7_81941444_82448777	1/0	t0002	4267	21	3	8	6	2	1	copy fasta	CACNA2D1	chr7	81941444	82448777
CACNA2D1_chr7_81941444_82448777	0/0	t0003	4267	17	9	2	6	0	0	copy fasta	CACNA2D1	chr7	81941444	82448777
CACNA2D1_chr7_81941444_82448777	0/0	t0004	4266	15	4	1	6	0	4	copy fasta	CACNA2D1	chr7	81941444	82448777
CACNA2D1_chr7_81941444_82448777	0/0	t0005	4267	12	3	5	2	0	2	copy fasta	CACNA2D1	chr7	81941444	82448777
CACNA2D1_chr7_81941444_82448777	0/0	t0006	4266	11	3	2	5	0	1	copy fasta	CACNA2D1	chr7	81941444	82448777