JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CACNA2D1_chr7_81941444_82448777	0/0	t0007	4267	8	8	0	0	0	0	copy fasta	CACNA2D1	chr7	81941444	82448777
CACNA2D1_chr7_81941444_82448777	0/0	t0008	4267	5	4	1	0	0	0	copy fasta	CACNA2D1	chr7	81941444	82448777
CACNA2D1_chr7_81941444_82448777	0/0	t0009	4267	3	2	1	0	0	0	copy fasta	CACNA2D1	chr7	81941444	82448777
CACNA2D1_chr7_81941444_82448777	0/0	t0010	4267	3	1	1	0	0	1	copy fasta	CACNA2D1	chr7	81941444	82448777
CACNA2D1_chr7_81941444_82448777	0/0	t0011	4267	2	2	0	0	0	0	copy fasta	CACNA2D1	chr7	81941444	82448777
CACNA2D1_chr7_81941444_82448777	0/0	t0012	4267	2	1	1	0	0	0	copy fasta	CACNA2D1	chr7	81941444	82448777
CACNA2D1_chr7_81941444_82448777	0/0	t0013	4267	1	1	0	0	0	0	copy fasta	CACNA2D1	chr7	81941444	82448777
CACNA2D1_chr7_81941444_82448777	0/0	t0014	4267	1	0	0	0	0	1	copy fasta	CACNA2D1	chr7	81941444	82448777
CACNA2D1_chr7_81941444_82448777	0/0	t0015	4267	1	0	1	0	0	0	copy fasta	CACNA2D1	chr7	81941444	82448777
CACNA2D1_chr7_81941444_82448777	0/0	t0016	4267	1	1	0	0	0	0	copy fasta	CACNA2D1	chr7	81941444	82448777
CACNA2D1_chr7_81941444_82448777	0/0	t0017	4266	1	0	1	0	0	0	copy fasta	CACNA2D1	chr7	81941444	82448777
CACNA2D1_chr7_81941444_82448777	0/0	t0018	4267	1	0	1	0	0	0	copy fasta	CACNA2D1	chr7	81941444	82448777
CACNA2D1_chr7_81941444_82448777	0/0	t0019	4267	1	0	0	1	0	0	copy fasta	CACNA2D1	chr7	81941444	82448777
CACNA2D1_chr7_81941444_82448777	0/0	t0020	4267	1	1	0	0	0	0	copy fasta	CACNA2D1	chr7	81941444	82448777
CACNA2D1_chr7_81941444_82448777	0/0	t0021	4267	1	1	0	0	0	0	copy fasta	CACNA2D1	chr7	81941444	82448777
CACNA2D1_chr7_81941444_82448777	0/0	t0022	4267	1	0	0	1	0	0	copy fasta	CACNA2D1	chr7	81941444	82448777
CACNA2D1_chr7_81941444_82448777	0/0	t0023	4266	1	0	0	1	0	0	copy fasta	CACNA2D1	chr7	81941444	82448777
CACNA2D2_chr3_50357613_50508634	1/0	t0001	2265	109	43	21	25	3	16	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	t0002	2280	45	0	11	33	0	1	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	t0003	2278	13	12	1	0	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	t0004	2263	11	0	1	6	1	3	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/1	t0005	2257	9	1	3	1	1	2	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	t0006	2259	7	4	1	1	0	1	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	t0007	2274	6	0	1	5	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	t0008	2265	4	4	0	0	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	t0009	2260	3	0	0	3	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	t0010	2272	2	2	0	0	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	t0011	2265	2	0	0	2	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	t0012	2278	2	1	1	0	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	t0013	2265	2	2	0	0	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	t0014	2265	2	0	0	2	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	t0015	2265	1	0	1	0	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	t0016	2274	1	0	1	0	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	t0017	2288	1	0	0	1	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	t0018	2286	1	0	0	0	0	1	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	t0019	2277	1	1	0	0	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	t0020	2265	1	0	0	0	1	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	t0021	2249	1	0	0	1	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	t0022	2278	1	1	0	0	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	t0023	2255	1	1	0	0	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	t0024	2263	1	1	0	0	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	t0025	2278	1	1	0	0	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	t0026	2265	1	0	0	1	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	t0027	2282	1	0	0	1	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	t0028	2280	1	0	1	0	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	t0029	2280	1	0	0	1	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	t0030	2265	1	0	0	1	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	t0031	2263	1	0	1	0	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D3_chr3_54117552_55079557	1/1	t0001	514	95	53	16	14	5	5	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	t0002	487	5	3	2	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557