JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CACNA2D3_chr3_54117552_55079557	0/0	t0003	514	3	3	0	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	t0004	517	3	2	1	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	t0005	495	3	1	1	0	1	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	t0006	514	3	0	2	0	0	1	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	t0007	514	1	0	1	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	t0008	514	1	0	1	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	t0009	491	1	1	0	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	t0010	495	1	1	0	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	t0011	495	1	1	0	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	t0012	487	1	1	0	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D4_chr12_1786963_1923652	1/0	t0001	1872	123	54	24	35	1	8	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/1	t0002	1874	88	5	15	50	6	11	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	t0003	1872	49	1	14	26	0	8	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	t0004	1871	10	3	0	7	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	t0005	1874	9	0	3	0	5	1	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	t0006	1872	6	6	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	t0007	1874	5	0	0	4	0	1	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	t0008	1872	5	5	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	t0009	1872	3	0	0	2	0	1	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	t0010	1872	3	2	1	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	t0011	1872	2	0	0	0	0	2	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	t0012	1872	2	2	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	t0013	1872	2	2	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	t0014	1872	2	1	1	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	t0015	1874	2	2	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	t0016	1872	1	1	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	t0017	1874	1	1	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	t0018	1872	1	1	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	t0019	1872	1	1	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	t0020	1872	1	0	1	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	t0021	1872	1	0	1	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	t0022	1874	1	1	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNB1_chr17_39168453_39202669	1/1	t0001	1915	242	26	50	113	15	36	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	t0002	1915	31	0	1	25	2	3	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	t0003	1915	23	23	0	0	0	0	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	t0004	1915	19	18	1	0	0	0	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	t0005	1915	16	0	3	13	0	0	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	t0006	1913	12	1	0	11	0	0	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	t0007	1915	10	4	6	0	0	0	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	t0008	1913	6	6	0	0	0	0	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	t0009	1915	5	0	0	5	0	0	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	t0010	1915	5	5	0	0	0	0	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	t0011	1913	4	0	1	2	1	0	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	t0012	1915	3	0	3	0	0	0	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	t0013	1915	3	3	0	0	0	0	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	t0014	1915	2	0	0	2	0	0	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	t0015	1915	2	2	0	0	0	0	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	t0016	1915	1	0	1	0	0	0	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	t0017	1913	1	1	0	0	0	0	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	t0018	1915	1	1	0	0	0	0	copy fasta	CACNB1	chr17	39168453	39202669