JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CACNB1_chr17_39168453_39202669	0/0	t0019	1915	1	1	0	0	0	0	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	t0020	1915	1	1	0	0	0	0	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	t0021	1915	1	1	0	0	0	0	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	t0022	1915	1	1	0	0	0	0	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	t0023	1913	1	0	0	0	0	1	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	t0024	1915	1	1	0	0	0	0	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	t0025	1915	1	0	0	1	0	0	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	t0026	1915	1	0	0	1	0	0	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	t0027	1915	1	1	0	0	0	0	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	t0028	1915	1	0	0	1	0	0	copy fasta	CACNB1	chr17	39168453	39202669
CACNB2_chr10_18135424_18548557	0/0	t0001	4150	35	8	11	14	1	1	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0002	4148	29	15	5	6	0	3	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0003	4147	18	8	8	0	1	1	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0004	4150	12	2	0	9	1	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0005	4144	10	0	0	7	0	3	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0006	4139	6	5	1	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0007	4146	5	5	0	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0008	4150	5	5	0	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0009	4147	5	0	2	1	0	2	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0010	4148	4	2	0	2	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0011	4147	3	2	1	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0012	4148	3	1	2	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0013	4155	3	2	1	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0014	4151	3	0	2	0	1	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0015	4147	3	3	0	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0016	4150	3	2	1	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0017	4148	3	1	0	2	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0018	4147	2	0	1	0	0	1	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0019	4150	2	2	0	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0020	4152	2	0	2	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0021	4151	2	1	1	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0022	4148	2	2	0	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0023	4146	2	0	2	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0024	4153	2	2	0	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0025	4151	1	0	1	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0026	4148	1	0	0	0	0	1	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0027	4152	1	0	1	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0028	4150	1	0	0	0	1	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0029	4150	1	0	0	1	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0030	4152	1	0	1	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0031	4150	1	0	1	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0032	4149	1	1	0	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0033	4138	1	1	0	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0034	4148	1	1	0	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0035	4140	1	1	0	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0036	4136	1	1	0	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0037	4147	1	0	1	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0038	4137	1	1	0	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0039	4145	1	1	0	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0040	4140	1	1	0	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557