JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CACNB2_chr10_18135424_18548557	0/0	t0041	4150	1	0	0	0	0	1	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0042	4149	1	1	0	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0043	4150	1	1	0	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0044	4148	1	0	1	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0045	4155	1	0	0	0	0	1	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0046	4150	1	0	0	1	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0047	4150	1	0	0	1	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0048	4150	1	1	0	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0049	4150	1	1	0	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0050	4151	1	0	0	1	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0051	4151	1	1	0	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0052	4151	1	1	0	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0053	4153	1	0	1	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0054	4136	1	1	0	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0055	4146	1	1	0	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0056	4153	1	0	0	0	1	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0057	4144	1	0	0	1	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0058	4145	1	0	0	1	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0059	4152	1	0	1	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	t0060	4148	1	0	0	1	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18335709_18548557	0/1	t0001	4055	79	12	14	42	3	7	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0002	4053	50	16	8	18	0	8	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	1/0	t0003	4052	32	10	13	1	2	5	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0004	4049	27	0	0	19	0	8	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0005	4044	8	7	1	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0006	4057	6	0	6	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0007	4055	6	6	0	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0008	4053	5	2	0	3	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0009	4056	5	0	3	0	2	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0010	4051	4	4	0	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0011	4052	4	4	0	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0012	4053	3	1	2	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0013	4060	3	2	1	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0014	4054	3	1	0	2	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0015	4056	3	1	2	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0016	4055	3	2	1	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0017	4054	2	0	0	2	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0018	4052	2	0	1	0	0	1	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0019	4055	2	0	0	2	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0020	4056	2	0	0	2	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0021	4053	2	2	0	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0022	4051	2	0	2	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0023	4058	2	2	0	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0024	4043	1	1	0	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0025	4045	1	1	0	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0026	4051	1	1	0	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0027	4053	1	0	0	0	0	1	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0028	4042	1	1	0	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0029	4050	1	1	0	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0030	4052	1	0	1	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557