JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CACNB2_chr10_18335709_18548557	0/0	t0031	4045	1	1	0	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0032	4052	1	1	0	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0033	4053	1	0	1	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0034	4054	1	0	0	1	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0035	4058	1	0	0	0	1	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0036	4056	1	0	0	0	1	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0037	4055	1	0	0	0	0	1	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0038	4051	1	0	0	0	0	1	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0039	4049	1	0	0	1	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0040	4049	1	0	0	1	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0041	4050	1	0	0	1	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0042	4049	1	0	0	1	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0043	4052	1	0	0	1	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0044	4055	1	0	1	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0045	4053	1	0	1	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0046	4050	1	0	0	1	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0047	4055	1	1	0	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0048	4055	1	0	0	1	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0049	4052	1	0	1	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0050	4054	1	0	0	1	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0051	4053	1	0	0	0	1	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0052	4053	1	0	0	1	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0053	4053	1	0	1	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0054	4053	1	0	0	1	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0055	4060	1	0	0	0	0	1	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0056	4055	1	0	0	1	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0057	4055	1	0	1	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0058	4055	1	0	0	1	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0059	4055	1	0	0	0	0	1	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0060	4055	1	0	0	1	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0061	4055	1	1	0	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0062	4054	1	1	0	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0063	4054	1	0	0	1	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0064	4056	1	0	0	1	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0065	4057	1	0	0	1	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0066	4056	1	1	0	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0067	4058	1	0	1	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0068	4056	1	1	0	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0069	4055	1	1	0	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	t0070	4057	1	1	0	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB3_chr12_48813496_48833941	1/0	t0001	1477	192	34	41	77	13	26	copy fasta	CACNB3	chr12	48813496	48833941
CACNB3_chr12_48813496_48833941	0/0	t0002	1477	155	47	26	72	2	8	copy fasta	CACNB3	chr12	48813496	48833941
CACNB3_chr12_48813496_48833941	0/0	t0003	1477	6	6	0	0	0	0	copy fasta	CACNB3	chr12	48813496	48833941
CACNB3_chr12_48813496_48833941	0/1	t0004	1477	5	1	1	0	1	1	copy fasta	CACNB3	chr12	48813496	48833941
CACNB3_chr12_48813496_48833941	0/0	t0005	1477	3	0	2	1	0	0	copy fasta	CACNB3	chr12	48813496	48833941
CACNB3_chr12_48813496_48833941	0/0	t0006	1477	2	2	0	0	0	0	copy fasta	CACNB3	chr12	48813496	48833941
CACNB3_chr12_48813496_48833941	0/0	t0007	1477	1	0	0	0	0	1	copy fasta	CACNB3	chr12	48813496	48833941
CACNB4_chr2_151827771_152104044	0/0	t0001	6382	49	2	14	23	2	8	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0002	6382	29	18	1	10	0	0	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0003	6382	18	0	4	11	1	2	copy fasta	CACNB4	chr2	151827771	152104044