JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CACNB4_chr2_151827771_152104044	0/0	t0004	6382	18	7	0	6	0	5	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0005	6381	13	12	1	0	0	0	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0006	6382	10	8	1	0	0	1	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0007	6381	10	0	2	5	1	2	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0008	6382	8	3	2	0	0	3	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0009	6382	8	1	4	0	3	0	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0010	6379	7	0	0	7	0	0	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0011	6382	6	6	0	0	0	0	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0012	6382	6	0	0	5	0	1	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0013	6382	5	0	0	5	0	0	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0014	6382	4	0	2	0	1	1	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0015	6382	3	3	0	0	0	0	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0016	6382	2	2	0	0	0	0	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0017	6381	2	0	0	1	0	1	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0018	6381	2	2	0	0	0	0	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0019	6380	2	2	0	0	0	0	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0020	6382	2	0	2	0	0	0	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0021	6379	2	0	0	1	0	1	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0022	6379	2	0	0	2	0	0	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0023	6382	1	0	1	0	0	0	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0024	6382	1	1	0	0	0	0	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0025	6382	1	1	0	0	0	0	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0026	6382	1	1	0	0	0	0	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0027	6382	1	1	0	0	0	0	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0028	6382	1	0	0	1	0	0	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0029	6382	1	0	0	0	0	1	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0030	6382	1	1	0	0	0	0	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0031	6382	1	1	0	0	0	0	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0032	6382	1	0	0	1	0	0	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0033	6382	1	0	0	1	0	0	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0034	6382	1	0	0	0	0	1	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0035	6382	1	1	0	0	0	0	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0036	6381	1	0	0	0	0	1	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0037	6381	1	1	0	0	0	0	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0038	6381	1	1	0	0	0	0	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0039	6382	1	0	1	0	0	0	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0040	6382	1	0	0	1	0	0	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0041	6382	1	0	0	1	0	0	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0042	6382	1	0	0	1	0	0	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0043	6381	1	0	1	0	0	0	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	t0044	6381	1	1	0	0	0	0	copy fasta	CACNB4	chr2	151827771	152104044
CACNG1_chr17_67039554_67061797	0/1	t0001	634	301	57	50	158	7	28	copy fasta	CACNG1	chr17	67039554	67061797
CACNG1_chr17_67039554_67061797	1/0	t0002	634	99	18	28	32	5	15	copy fasta	CACNG1	chr17	67039554	67061797
CACNG1_chr17_67039554_67061797	0/0	t0003	634	9	6	3	0	0	0	copy fasta	CACNG1	chr17	67039554	67061797
CACNG1_chr17_67039554_67061797	0/0	t0004	634	7	6	1	0	0	0	copy fasta	CACNG1	chr17	67039554	67061797
CACNG1_chr17_67039554_67061797	0/0	t0005	634	4	2	0	0	0	2	copy fasta	CACNG1	chr17	67039554	67061797
CACNG1_chr17_67039554_67061797	0/0	t0006	634	3	3	0	0	0	0	copy fasta	CACNG1	chr17	67039554	67061797
CACNG1_chr17_67039554_67061797	0/0	t0007	634	2	0	0	0	0	2	copy fasta	CACNG1	chr17	67039554	67061797
CACNG1_chr17_67039554_67061797	0/0	t0008	634	1	1	0	0	0	0	copy fasta	CACNG1	chr17	67039554	67061797
CACNG1_chr17_67039554_67061797	0/0	t0009	634	1	0	0	0	0	1	copy fasta	CACNG1	chr17	67039554	67061797