JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CACNG1_chr17_67039554_67061797	0/0	t0010	634	1	1	0	0	0	0	copy fasta	CACNG1	chr17	67039554	67061797
CACNG2_chr22_36555857_36708752	0/0	t0001	4671	25	1	3	17	0	4	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0002	4667	15	8	6	0	0	1	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0003	4674	12	0	3	7	1	1	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0004	4671	11	0	2	6	1	2	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0005	4673	7	1	1	2	0	3	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0006	4674	7	0	3	4	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	1/0	t0007	4671	5	0	3	0	1	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0008	4670	5	1	1	0	2	1	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0009	4673	4	0	0	4	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0010	4671	3	0	2	0	0	1	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0011	4673	3	3	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0012	4671	3	2	0	0	1	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0013	4666	3	1	2	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0014	4670	2	0	0	2	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0015	4670	2	2	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0016	4670	2	0	0	0	0	2	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0017	4666	2	0	1	0	0	1	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0018	4667	2	2	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0019	4672	2	2	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0020	4672	2	2	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0021	4672	2	2	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0022	4671	2	2	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0023	4674	2	2	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0024	4675	2	0	0	2	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0025	4670	2	0	1	0	0	1	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0026	4667	1	0	0	0	0	1	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0027	4672	1	0	1	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0028	4671	1	0	1	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0029	4670	1	0	0	0	0	1	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0030	4673	1	0	1	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0031	4673	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0032	4672	1	0	0	1	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0033	4673	1	0	1	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0034	4669	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0035	4669	1	0	1	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0036	4671	1	0	0	1	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0037	4671	1	0	0	1	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0038	4672	1	0	0	1	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0039	4672	1	0	0	1	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0040	4671	1	0	0	0	1	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0041	4671	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0042	4668	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0043	4667	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0044	4668	1	0	0	1	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0045	4667	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0046	4672	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0047	4670	1	0	1	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0048	4668	1	0	1	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0049	4656	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752