JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CACNG2_chr22_36555857_36708752	0/0	t0050	4661	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0051	4661	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0052	4672	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0053	4673	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0054	4677	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0055	4672	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0056	4674	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0057	4677	1	0	0	0	0	1	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0058	4678	1	0	0	1	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0059	4672	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0060	4671	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0061	4674	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0062	4670	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0063	4673	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0064	4670	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0065	4674	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0066	4669	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0067	4672	1	0	1	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0068	4670	1	0	0	1	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0069	4675	1	0	1	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0070	4675	1	0	0	0	0	1	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0071	4671	1	0	1	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0072	4676	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0073	4675	1	0	0	1	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/1	t0074	4673	1	0	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0075	4674	1	0	0	1	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0076	4674	1	0	1	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0077	4669	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0078	4671	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0079	4671	1	0	0	0	0	1	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0080	4669	1	0	1	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0081	4674	1	0	0	0	1	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0082	4671	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0083	4671	1	0	0	0	0	1	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0084	4670	1	0	1	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0085	4670	1	0	1	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0086	4672	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0087	4672	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0088	4669	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0089	4668	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0090	4670	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0091	4669	1	0	1	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0092	4667	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0093	4669	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0094	4667	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0095	4667	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0096	4669	1	0	1	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0097	4668	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0098	4668	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0099	4666	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752