JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CACNG2_chr22_36555857_36708752	0/0	t0100	4672	1	0	1	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0101	4671	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0102	4664	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0103	4667	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0104	4663	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0105	4665	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0106	4667	1	1	0	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0107	4674	1	0	0	0	0	1	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0108	4667	1	0	1	0	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0109	4678	1	0	0	1	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0110	4677	1	0	0	1	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0111	4678	1	0	0	1	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG2_chr22_36555857_36708752	0/0	t0112	4677	1	0	0	1	0	0	copy fasta	CACNG2	chr22	36555857	36708752
CACNG3_chr16_24251335_24367412	1/0	t0001	970	324	76	63	139	12	33	copy fasta	CACNG3	chr16	24251335	24367412
CACNG3_chr16_24251335_24367412	0/1	t0002	971	32	6	4	10	2	9	copy fasta	CACNG3	chr16	24251335	24367412
CACNG3_chr16_24251335_24367412	0/0	t0003	970	5	5	0	0	0	0	copy fasta	CACNG3	chr16	24251335	24367412
CACNG3_chr16_24251335_24367412	0/0	t0004	970	3	3	0	0	0	0	copy fasta	CACNG3	chr16	24251335	24367412
CACNG3_chr16_24251335_24367412	0/0	t0005	970	1	0	0	1	0	0	copy fasta	CACNG3	chr16	24251335	24367412
CACNG3_chr16_24251335_24367412	0/0	t0006	970	1	0	1	0	0	0	copy fasta	CACNG3	chr16	24251335	24367412
CACNG4_chr17_66959707_67038398	0/1	t0001	2600	104	4	14	71	3	11	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	1/0	t0002	2600	89	28	30	17	1	12	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0003	2600	60	14	13	23	3	7	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0004	2600	18	2	2	12	0	2	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0005	2600	13	12	1	0	0	0	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0006	2600	8	7	1	0	0	0	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0007	2600	6	0	1	5	0	0	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0008	2600	6	3	3	0	0	0	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0009	2600	3	0	2	1	0	0	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0010	2600	3	0	0	3	0	0	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0011	2600	3	3	0	0	0	0	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0012	2600	3	3	0	0	0	0	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0013	2600	2	0	2	0	0	0	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0014	2600	2	2	0	0	0	0	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0015	2600	2	0	2	0	0	0	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0016	2600	2	0	0	0	0	2	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0017	2600	2	2	0	0	0	0	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0018	2600	1	0	0	0	0	1	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0019	2600	1	1	0	0	0	0	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0020	2600	1	1	0	0	0	0	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0021	2600	1	1	0	0	0	0	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0022	2600	1	0	0	1	0	0	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0023	2600	1	1	0	0	0	0	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0024	2600	1	0	0	0	0	1	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0025	2600	1	0	0	0	0	1	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0026	2600	1	1	0	0	0	0	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0027	2600	1	0	0	0	0	1	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0028	2600	1	0	0	1	0	0	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0029	2600	1	0	0	1	0	0	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0030	2600	1	0	1	0	0	0	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0031	2600	1	0	0	0	1	0	copy fasta	CACNG4	chr17	66959707	67038398