JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CACNG4_chr17_66959707_67038398	0/0	t0032	2600	1	1	0	0	0	0	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0033	2600	1	1	0	0	0	0	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0034	2600	1	1	0	0	0	0	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0035	2600	1	1	0	0	0	0	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0036	2600	1	0	0	1	0	0	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0037	2600	1	0	1	0	0	0	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0038	2600	1	1	0	0	0	0	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0039	2600	1	0	1	0	0	0	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0040	2600	1	1	0	0	0	0	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0041	2600	1	1	0	0	0	0	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0042	2600	1	1	0	0	0	0	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	t0043	2600	1	1	0	0	0	0	copy fasta	CACNG4	chr17	66959707	67038398
CACNG5_chr17_66830117_66899751	0/0	t0001	9749	65	4	10	45	3	3	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	1/0	t0002	9749	23	1	7	11	0	3	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0003	9749	22	0	9	8	0	5	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/1	t0004	9740	22	6	4	5	2	4	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0005	9736	15	0	0	15	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0006	9749	14	4	1	6	1	2	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0007	9748	10	2	0	6	1	1	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0008	9748	8	8	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0009	9748	6	6	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0010	9750	6	0	1	1	3	1	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0011	9749	6	0	3	3	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0012	9749	6	0	0	6	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0013	9746	5	4	1	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0014	9750	5	2	2	1	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0015	9749	4	0	0	1	0	3	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0016	9735	4	1	3	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0017	9741	4	0	0	4	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0018	9746	3	3	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0019	9740	3	2	1	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0020	9749	3	0	1	0	0	2	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0021	9748	3	0	1	2	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0022	9749	3	0	1	0	0	2	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0023	9750	3	0	2	1	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0024	9749	3	0	1	0	1	1	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0025	9738	3	3	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0026	9748	3	3	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0027	9745	3	0	1	0	0	2	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0028	9736	3	1	2	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0029	9736	2	0	0	2	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0030	9749	2	1	1	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0031	9749	2	0	2	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0032	9749	2	0	2	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0033	9748	2	0	0	2	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0034	9748	2	0	0	1	0	1	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0035	9750	2	2	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0036	9739	2	0	1	0	1	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0037	9749	2	0	0	2	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0038	9748	2	2	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751