JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CACNG5_chr17_66830117_66899751	0/0	t0039	9748	2	2	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0040	9739	2	2	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0041	9749	2	0	0	1	0	1	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0042	9740	2	0	0	0	2	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0043	9740	2	0	0	1	0	1	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0044	9740	2	0	0	2	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0045	9739	2	2	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0046	9746	1	1	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0047	9739	1	0	0	1	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0048	9735	1	0	0	1	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0049	9737	1	0	0	1	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0050	9736	1	0	0	1	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0051	9747	1	1	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0052	9747	1	0	1	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0053	9746	1	1	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0054	9749	1	1	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0055	9748	1	1	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0056	9748	1	1	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0057	9748	1	1	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0058	9750	1	0	1	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0059	9749	1	0	0	1	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0060	9749	1	0	1	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0061	9748	1	0	0	0	0	1	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0062	9749	1	0	0	0	0	1	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0063	9749	1	0	0	1	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0064	9750	1	0	1	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0065	9750	1	0	0	0	0	1	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0066	9749	1	0	0	1	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0067	9749	1	0	0	1	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0068	9749	1	0	0	1	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0069	9749	1	0	0	0	0	1	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0070	9738	1	1	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0071	9750	1	0	0	1	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0072	9748	1	0	1	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0073	9749	1	0	1	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0074	9749	1	0	1	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0075	9748	1	0	1	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0076	9750	1	0	0	1	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0077	9750	1	1	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0078	9749	1	1	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0079	9749	1	0	0	1	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0080	9739	1	1	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0081	9749	1	0	1	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0082	9749	1	0	0	1	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0083	9749	1	1	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0084	9748	1	0	0	1	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0085	9749	1	1	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0086	9749	1	1	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0087	9750	1	0	1	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0088	9749	1	0	1	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751