JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CACNG5_chr17_66830117_66899751	0/0	t0089	9737	1	1	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0090	9748	1	1	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0091	9749	1	0	0	0	0	1	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0092	9735	1	1	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0093	9740	1	0	0	1	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0094	9735	1	1	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0095	9750	1	0	0	0	0	1	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0096	9739	1	0	0	0	1	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0097	9741	1	0	0	1	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0098	9740	1	0	0	0	0	1	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0099	9748	1	1	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0100	9748	1	1	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0101	9749	1	1	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0102	9739	1	1	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0103	9750	1	0	0	0	0	1	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0104	9749	1	0	1	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0105	9748	1	0	1	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0106	9740	1	0	1	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0107	9761	1	0	0	0	1	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0108	9741	1	1	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0109	9740	1	1	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0110	9740	1	1	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0111	9739	1	0	0	1	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0112	9739	1	1	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0113	9730	1	1	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0114	9739	1	1	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0115	9744	1	1	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0116	9745	1	0	0	0	0	1	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0117	9749	1	0	0	0	0	1	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0118	9749	1	0	0	1	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0119	9749	1	1	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0120	9748	1	0	1	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0121	9749	1	0	1	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0122	9735	1	0	1	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0123	9734	1	0	1	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0124	9740	1	0	1	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	t0125	9745	1	1	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG6_chr19_53986637_54017666	0/0	t0001	1719	97	3	21	61	3	9	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0002	1719	68	23	9	22	3	11	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0003	1719	49	19	12	8	5	5	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	1/1	t0004	1719	43	12	14	7	2	6	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0005	1719	24	0	3	18	0	3	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0006	1719	24	4	5	13	0	2	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0007	1719	23	6	3	13	0	1	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0008	1719	19	2	1	11	1	4	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0009	1719	19	0	2	15	1	1	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0010	1719	9	0	6	3	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0011	1719	8	0	0	8	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0012	1719	5	5	0	0	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0013	1719	4	3	1	0	0	0	copy fasta	CACNG6	chr19	53986637	54017666