JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CACNG6_chr19_53986637_54017666	0/0	t0014	1719	3	0	3	0	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0015	1719	2	2	0	0	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0016	1719	2	0	0	2	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0017	1719	2	2	0	0	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0018	1719	2	2	0	0	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0019	1719	2	1	1	0	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0020	1719	1	1	0	0	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0021	1719	1	0	1	0	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0022	1719	1	0	0	1	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0023	1719	1	0	0	0	0	1	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0024	1719	1	1	0	0	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0025	1719	1	0	0	0	0	1	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0026	1719	1	0	0	1	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0027	1719	1	1	0	0	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0028	1719	1	0	0	0	1	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0029	1719	1	0	0	1	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0030	1719	1	1	0	0	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0031	1719	1	0	0	1	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0032	1719	1	0	0	1	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0033	1719	1	0	0	1	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0034	1719	1	0	0	1	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0035	1719	1	0	0	1	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0036	1719	1	1	0	0	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0037	1719	1	1	0	0	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0038	1719	1	1	0	0	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0039	1719	1	1	0	0	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0040	1719	1	0	0	1	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0041	1719	1	1	0	0	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0042	1719	1	1	0	0	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0043	1719	1	1	0	0	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	t0044	1719	1	1	0	0	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG7_chr19_53904278_53948950	0/0	t0001	1926	289	56	57	128	15	33	copy fasta	CACNG7	chr19	53904278	53948950
CACNG7_chr19_53904278_53948950	0/0	t0002	1927	30	5	10	8	2	5	copy fasta	CACNG7	chr19	53904278	53948950
CACNG7_chr19_53904278_53948950	0/0	t0003	1926	8	8	0	0	0	0	copy fasta	CACNG7	chr19	53904278	53948950
CACNG7_chr19_53904278_53948950	0/0	t0004	1926	8	8	0	0	0	0	copy fasta	CACNG7	chr19	53904278	53948950
CACNG7_chr19_53904278_53948950	0/0	t0005	1927	6	2	1	2	0	1	copy fasta	CACNG7	chr19	53904278	53948950
CACNG7_chr19_53904278_53948950	0/0	t0006	1927	3	3	0	0	0	0	copy fasta	CACNG7	chr19	53904278	53948950
CACNG7_chr19_53904278_53948950	0/0	t0007	1926	2	2	0	0	0	0	copy fasta	CACNG7	chr19	53904278	53948950
CACNG7_chr19_53904278_53948950	0/0	t0008	1927	1	1	0	0	0	0	copy fasta	CACNG7	chr19	53904278	53948950
CACNG7_chr19_53904278_53948950	0/0	t0009	1926	1	0	0	0	1	0	copy fasta	CACNG7	chr19	53904278	53948950
CACNG7_chr19_53904278_53948950	0/0	t0010	1926	1	0	0	0	0	1	copy fasta	CACNG7	chr19	53904278	53948950
CACNG7_chr19_53904278_53948950	0/0	t0011	1927	1	1	0	0	0	0	copy fasta	CACNG7	chr19	53904278	53948950
CACNG7_chr19_53904278_53948950	0/0	t0012	1928	1	0	0	1	0	0	copy fasta	CACNG7	chr19	53904278	53948950
CACNG7_chr19_53904278_53948950	0/0	t0013	1927	1	1	0	0	0	0	copy fasta	CACNG7	chr19	53904278	53948950
CACNG7_chr19_53904278_53948950	0/0	t0014	1927	1	1	0	0	0	0	copy fasta	CACNG7	chr19	53904278	53948950
CACNG7_chr19_53904278_53948950	0/0	t0015	1926	1	1	0	0	0	0	copy fasta	CACNG7	chr19	53904278	53948950
CACNG7_chr19_53904278_53948950	0/0	t0016	1926	1	1	0	0	0	0	copy fasta	CACNG7	chr19	53904278	53948950
CACNG7_chr19_53904278_53948950	0/0	t0017	1926	1	1	0	0	0	0	copy fasta	CACNG7	chr19	53904278	53948950
CACNG7_chr19_53904278_53948950	0/0	t0018	1926	1	0	1	0	0	0	copy fasta	CACNG7	chr19	53904278	53948950
CACNG7_chr19_53904278_53948950	0/0	t0019	1926	1	1	0	0	0	0	copy fasta	CACNG7	chr19	53904278	53948950