JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CACNG7_chr19_53904278_53948950	0/0	t0020	1926	1	1	0	0	0	0	copy fasta	CACNG7	chr19	53904278	53948950
CACNG7_chr19_53904278_53948950	0/0	t0021	1926	1	1	0	0	0	0	copy fasta	CACNG7	chr19	53904278	53948950
CACNG7_chr19_53904278_53948950	0/0	t0022	1926	1	0	0	1	0	0	copy fasta	CACNG7	chr19	53904278	53948950
CACNG7_chr19_53904278_53948950	0/0	t0023	1926	1	0	1	0	0	0	copy fasta	CACNG7	chr19	53904278	53948950
CACNG7_chr19_53904278_53948950	0/0	t0024	1926	1	0	0	1	0	0	copy fasta	CACNG7	chr19	53904278	53948950
CACNG7_chr19_53904278_53948950	0/0	t0025	1926	1	0	0	1	0	0	copy fasta	CACNG7	chr19	53904278	53948950
CACNG8_chr19_53957937_53995215	0/0	t0001	7590	41	0	11	21	6	3	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0002	7583	38	3	7	21	1	6	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0003	7569	30	1	10	13	3	3	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0004	7571	16	10	1	1	0	4	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0005	7592	12	0	5	6	1	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0006	7579	12	0	9	0	1	2	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0007	7589	11	0	2	8	0	1	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0008	7589	10	0	1	7	0	2	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0009	7590	9	7	1	1	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0010	7595	6	6	0	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	1/1	t0011	7573	6	4	0	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0012	7589	6	0	4	2	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0013	7581	5	4	1	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0014	7581	5	0	0	4	0	1	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0015	7597	4	4	0	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0016	7586	4	0	1	0	0	3	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0017	7588	4	0	3	1	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0018	7593	4	0	0	4	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0019	7585	4	0	1	3	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0020	7593	3	1	2	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0021	7586	3	1	0	0	0	2	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0022	7592	3	3	0	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0023	7589	3	0	0	3	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0024	7590	3	3	0	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0025	7594	3	2	1	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0026	7583	3	3	0	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0027	7577	3	0	0	3	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0028	7597	3	2	1	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0029	7584	2	0	0	2	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0030	7592	2	0	0	1	0	1	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0031	7594	2	2	0	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0032	7585	2	0	2	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0033	7584	2	0	1	0	1	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0034	7584	2	0	1	0	0	1	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0035	7584	2	0	0	2	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0036	7584	2	0	0	2	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0037	7586	2	0	2	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0038	7573	2	0	1	0	1	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0039	7587	2	2	0	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0040	7589	2	2	0	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0041	7588	2	1	0	1	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0042	7590	2	0	0	2	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0043	7587	2	1	1	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0044	7584	2	0	1	0	1	0	copy fasta	CACNG8	chr19	53957937	53995215