JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
CACNG8_chr19_53957937_53995215	0/0	t0045	7584	2	0	1	0	1	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0046	7582	2	0	0	2	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0047	7583	2	1	0	0	1	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0048	7582	2	1	0	1	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0049	7583	2	0	0	2	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0050	7589	2	0	0	2	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0051	7584	2	0	0	2	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0052	7590	1	0	0	1	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0053	7591	1	0	0	0	1	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0054	7586	1	0	0	1	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0055	7590	1	0	1	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0056	7593	1	0	0	0	1	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0057	7580	1	0	1	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0058	7585	1	0	0	1	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0059	7587	1	0	0	1	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0060	7583	1	0	0	1	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0061	7608	1	0	0	0	1	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0062	7587	1	0	1	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0063	7597	1	1	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0064	7591	1	1	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0065	7593	1	1	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0066	7597	1	1	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0067	7603	1	1	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0068	7590	1	1	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0069	7586	1	0	0	1	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0070	7592	1	1	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0071	7582	1	0	0	0	1	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0072	7586	1	1	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0073	7586	1	0	0	1	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0074	7582	1	0	0	1	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0075	7585	1	0	0	1	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0076	7589	1	0	0	1	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0077	7591	1	0	0	1	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0078	7581	1	0	0	1	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0079	7590	1	1	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0080	7569	1	1	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0081	7570	1	1	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0082	7569	1	0	0	1	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0083	7569	1	0	0	0	1	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0084	7570	1	0	0	0	1	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0085	7571	1	0	0	1	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0086	7573	1	0	1	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0087	7568	1	0	0	1	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0088	7573	1	1	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0089	7583	1	1	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0090	7584	1	1	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0091	7584	1	1	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0092	7585	1	1	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0093	7593	1	0	0	1	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0094	7579	1	0	0	1	0	copy fasta	CACNG8	chr19	53957937	53995215