JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CACNG8_chr19_53957937_53995215	0/0	t0095	7583	1	1	0	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0096	7585	1	1	0	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0097	7589	1	1	0	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0098	7584	1	1	0	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0099	7591	1	0	1	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0100	7590	1	1	0	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0101	7589	1	0	0	1	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0102	7590	1	0	0	1	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0103	7581	1	1	0	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0104	7582	1	1	0	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0105	7581	1	1	0	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0106	7585	1	1	0	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0107	7589	1	0	0	1	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0108	7583	1	0	0	1	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0109	7583	1	0	0	1	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0110	7581	1	0	0	1	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0111	7581	1	0	0	1	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0112	7583	1	0	1	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0113	7583	1	0	0	1	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0114	7583	1	0	0	0	0	1	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0115	7587	1	0	0	1	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0116	7583	1	0	0	1	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0117	7585	1	0	0	0	1	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0118	7576	1	1	0	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0119	7569	1	1	0	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0120	7590	1	0	0	1	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0121	7587	1	1	0	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0122	7587	1	0	0	0	1	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0123	7590	1	0	0	1	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0124	7589	1	0	0	1	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0125	7591	1	0	0	1	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0126	7589	1	0	0	1	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0127	7591	1	0	0	1	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0128	7588	1	1	0	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0129	7586	1	1	0	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0130	7588	1	0	0	1	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0131	7587	1	0	0	1	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0132	7573	1	1	0	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0133	7591	1	1	0	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0134	7583	1	1	0	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0135	7585	1	0	0	0	0	1	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0136	7587	1	0	0	1	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0137	7591	1	0	0	1	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0138	7570	1	0	1	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0139	7584	1	0	0	1	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0140	7591	1	0	0	0	0	1	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0141	7584	1	0	0	1	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0142	7584	1	0	0	1	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0143	7590	1	0	0	1	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	t0144	7588	1	1	0	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215