JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CACNG8_chr19_53957937_53995215	0/0	t0145	7583	1	0	0	0	1	0	copy fasta	CACNG8	chr19	53957937	53995215
CACTIN_chr19_3605645_3631790	0/1	t0001	1307	155	35	42	58	7	12	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	1/0	t0002	1307	127	16	12	76	6	16	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	t0003	1307	48	0	2	38	0	8	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	t0004	1307	26	25	1	0	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	t0005	1307	14	0	11	0	3	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	t0006	1307	5	5	0	0	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	t0007	1307	5	0	0	0	0	5	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	t0008	1307	3	0	0	2	0	1	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	t0009	1307	3	3	0	0	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	t0010	1307	3	3	0	0	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	t0011	1307	3	1	2	0	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	t0012	1307	2	2	0	0	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	t0013	1307	2	0	0	2	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	t0014	1307	2	0	0	2	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	t0015	1307	1	1	0	0	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	t0016	1307	1	1	0	0	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	t0017	1307	1	0	0	1	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	t0018	1332	1	0	0	1	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	t0019	1307	1	1	0	0	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	t0020	1307	1	0	0	1	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	t0021	1307	1	0	0	1	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	t0022	1307	1	1	0	0	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	t0023	1307	1	1	0	0	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	t0024	1307	1	1	0	0	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACUL1_chr10_118671411_118759970	0/0	t0001	9921	78	17	11	40	2	8	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0002	9925	28	1	7	11	3	6	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0003	9932	28	1	5	21	0	1	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0004	9926	25	3	6	9	2	5	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	1/0	t0005	9926	17	11	1	3	0	1	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0006	9926	15	0	0	13	0	2	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0007	9927	9	1	2	2	1	3	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0008	9936	8	8	0	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0009	9926	7	0	0	7	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0010	10011	6	3	2	1	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0011	9932	6	0	0	6	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0012	9924	6	2	2	1	1	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0013	9932	6	0	0	6	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0014	9933	6	0	3	3	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0015	10010	6	1	4	1	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0016	9928	5	5	0	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0017	9921	5	0	0	5	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/1	t0018	10010	5	0	1	0	0	3	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0019	9920	4	2	0	2	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0020	9922	4	1	3	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0021	9922	4	0	0	4	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0022	9926	3	3	0	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0023	9922	3	0	1	2	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0024	9921	3	0	2	1	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0025	9924	3	0	0	0	0	3	copy fasta	CACUL1	chr10	118671411	118759970