JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CACUL1_chr10_118671411_118759970	0/0	t0026	9921	3	0	0	2	0	1	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0027	9932	3	0	0	3	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0028	9926	3	0	1	0	2	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0029	9922	2	0	0	2	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0030	9936	2	2	0	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0031	9932	2	2	0	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0032	9924	2	0	0	1	0	1	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0033	9930	2	0	0	2	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0034	9920	2	2	0	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0035	9926	2	2	0	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0036	9927	2	1	0	1	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0037	9919	2	0	0	2	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0038	9923	2	0	0	2	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0039	9936	2	2	0	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0040	9925	2	2	0	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0041	9918	2	0	0	0	0	2	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0042	9926	1	0	0	1	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0043	9918	1	0	0	1	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0044	9921	1	0	0	1	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0045	9921	1	0	0	1	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0046	10011	1	1	0	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0047	10012	1	1	0	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0048	10010	1	1	0	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0049	10011	1	0	1	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0050	10012	1	0	0	0	0	1	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0051	9937	1	1	0	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0052	9925	1	1	0	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0053	9921	1	0	0	1	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0054	9920	1	0	0	1	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0055	9918	1	0	0	0	0	1	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0056	9924	1	0	0	0	0	1	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0057	9930	1	0	0	1	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0058	9928	1	0	0	1	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0059	9920	1	0	0	0	0	1	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0060	9924	1	0	0	0	1	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0061	9932	1	1	0	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0062	9926	1	0	0	1	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0063	9930	1	0	0	1	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0064	9919	1	1	0	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0065	9927	1	0	1	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0066	9921	1	1	0	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0067	9921	1	0	0	1	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0068	9925	1	0	0	0	1	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0069	9923	1	0	0	1	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0070	9925	1	0	1	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0071	9925	1	0	0	1	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0072	9927	1	0	0	1	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0073	9921	1	0	0	1	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0074	9924	1	0	0	0	0	1	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0075	9915	1	0	0	0	0	1	copy fasta	CACUL1	chr10	118671411	118759970